PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G19510.1
Common NameASL34, F3P11.11, LBD8
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 120aa    MW: 14209.6 Da    PI: 7.4596
Description LOB domain-containing protein 8
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G19510.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.23.9e-3191081100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +C++C +++r+C++ C +a+yfp e +++++ +++lFG+ +++k+++++pee+++++++s+++e++a+++dPv+G +g+++k+ ++++ +ka l++l+
  AT2G19510.1   9 PCCVCITKNRNCPRFCEYAEYFPYELRSHYESTNELFGTPKIIKMMRHAPEEKKQMLATSIIMEGNAWTNDPVSGGFGMVQKIMWKIMLHKAYLHELE 106
                  7*********************************************************************************************9998 PP

       DUF260  99 ee 100
                  e+
  AT2G19510.1 107 EK 108
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.1858109IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-239105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MEPLGDRRPC CVCITKNRNC PRFCEYAEYF PYELRSHYES TNELFGTPKI IKMMRHAPEE  60
KKQMLATSII MEGNAWTNDP VSGGFGMVQK IMWKIMLHKA YLHELEEKIK EEKEKIELHL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402544760.0
Genevisible265932_at0.0
Expression AtlasAT2G19510-
AtGenExpressAT2G19510-
ATTED-IIAT2G19510-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G19510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G19510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738670.0AB473867.1 Arabidopsis thaliana ASL34 mRNA for ASYMMETRIC LEAVES2-like 34 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179541.16e-86LOB domain-containing protein 8
SwissprotQ9ZUP05e-87LBD8_ARATH; LOB domain-containing protein 8
TrEMBLA0A178WK743e-64A0A178WK74_ARATH; LBD5
STRINGAT2G19510.12e-85(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Publications ? help Back to Top
  1. Iwakawa H, et al.
    The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper.
    Plant Cell Physiol., 2002. 43(5): p. 467-78
    [PMID:12040093]
  2. Shuai B,Reynaga-Peña CG,Springer PS
    The lateral organ boundaries gene defines a novel, plant-specific gene family.
    Plant Physiol., 2002. 129(2): p. 747-61
    [PMID:12068116]
  3. Matsumura Y,Iwakawa H,Machida Y,Machida C
    Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members.
    Plant J., 2009. 58(3): p. 525-37
    [PMID:19154202]