PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G35430.1
Common NameT32F12.19
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 252aa    MW: 27735.7 Da    PI: 8.5766
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G35430.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.16.7e-14144170127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt++C+ ++ tG+C++G+ C+FaHgp
  AT2G35430.1 144 WKTRICNKWQTTGYCPFGSHCHFAHGP 170
                  8************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.2E-1468104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-670103IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-57198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4697199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-17138173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10141174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117143171IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-8143170IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-11144170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0001078developmental stageplant embryo cotyledonary stage
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSHRRDYGSD AVHVRITHDP PPENCFPNSG DSSVWATEDD YSRVWAINSD GAESPSKKTR  60
SSSSSEIGKS FFKTKLCFKF RAGTCPYSAS SCHFAHSAEE LRLPPPPPPN WQETVTEASR  120
NRESFAVSLG PRGNVAQTLK SPNWKTRICN KWQTTGYCPF GSHCHFAHGP SELHTFGGGL  180
VEGECKIGTS ATLDTKQRGQ VDTVTSLVSP GVSSQRTSSA VTQKPNGVRT QRKWKGPDKI  240
SRVYGDWIDD IE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.495670.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible266622_at0.0
Expression AtlasAT2G35430-
AtGenExpressAT2G35430-
ATTED-IIAT2G35430-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G35430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G35430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0202320.0BT020232.1 Arabidopsis thaliana At2g35430 gene, complete cds.
GenBankBT0205530.0BT020553.1 Arabidopsis thaliana At2g35430 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181086.20.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ5PP650.0C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A178VV911e-179A0A178VV91_ARATH; Uncharacterized protein
STRINGAT2G35430.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Representative plantOGRP20451737
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  3. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]