PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G35700.1
Common NameATERF38, ERF038, ERF38, T20F21.11
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 194aa    MW: 21617.3 Da    PI: 6.6865
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G35700.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-184493255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  AT2G35700.1 44 NFRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTAEMAARAHDVAALAIKG 93
                 69****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.84E-3543103No hitNo description
PfamPF008471.3E-114393IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2144102IPR016177DNA-binding domain
SMARTSM003802.3E-4044107IPR001471AP2/ERF domain
PROSITE profilePS5103222.68244101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3244102IPR001471AP2/ERF domain
PRINTSPR003671.9E-104556IPR001471AP2/ERF domain
PRINTSPR003671.9E-106783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0005059anatomyroot endodermis
PO:0009001anatomyfruit
PO:0009046anatomyflower
PO:0009053anatomypeduncle
PO:0020023anatomyouter integument
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007632developmental stageseed maturation stage
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MERDDCRRFQ DSPAQTTERR VKYKPKKKRA KDDDDEKVVS KHPNFRGVRM RQWGKWVSEI  60
REPKKKSRIW LGTFSTAEMA ARAHDVAALA IKGGSAHLNF PELAYHLPRP ASADPKDIQA  120
AAAAAAAAVA IDMDVETSSP SPSPTVTETS SPAMIALSDD AFSDLPDLLL NVNHNIDGFW  180
DSFPYEEPFL SQSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1732101272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184039270.0
Genevisible265842_at0.0
Expression AtlasAT2G35700-
AtGenExpressAT2G35700-
ATTED-IIAT2G35700-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G35700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G35700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0060680.0AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence.
GenBankAY5608450.0AY560845.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g35700) mRNA, complete cds.
GenBankBT0257540.0BT025754.1 Arabidopsis thaliana At2g35700 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181113.11e-142ERF family protein 38
SwissprotQ9ZQP31e-143ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A178VWJ31e-140A0A178VWJ3_ARATH; ERF38
STRINGAT2G35700.11e-141(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Brown RL,Kazan K,McGrath KC,Maclean DJ,Manners JM
    A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis.
    Plant Physiol., 2003. 132(2): p. 1020-32
    [PMID:12805630]
  3. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  6. Lasserre E,Jobet E,Llauro C,Delseny M
    AtERF38 (At2g35700), an AP2/ERF family transcription factor gene from Arabidopsis thaliana, is expressed in specific cell types of roots, stems and seeds that undergo suberization.
    Plant Physiol. Biochem., 2008. 46(12): p. 1051-61
    [PMID:18723362]
  7. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]