PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT2G37430.1

Common Name

F3G5.22, ZAT11

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 178aa MW: 20230.4 Da PI: 10.1201

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT2G37430.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H +H AT2G37430.1 47 FECKTCNKRFSSFQALGGHRASH 69 89**********99999998887 PP
2	zf-C2H2	15	7.4e-05	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C++sF + L H+r+H AT2G37430.1 94 HKCSICSQSFGTGQALGGHMRRH 116 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-4	35	71	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.58E-7	46	116	No hit	No description
PROSITE profile	PS50157	10.533	47	74	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.093	47	69	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.9E-12	47	71	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.014	94	116	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.827	94	121	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.9E-11	94	118	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0071289	Biological Process	cellular response to nickel ion
GO:2000280	Biological Process	regulation of root development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell
PO:0009005	anatomy	root
PO:0020030	anatomy	cotyledon
PO:0020038	anatomy	petiole

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKRERSDFEE SLKNIDIAKC LMILAQTSMV KQIGLNQHTE SHTSNQFECK TCNKRFSSFQ 60 ALGGHRASHK KPKLTVEQKD VKHLSNDYKG NHFHKCSICS QSFGTGQALG GHMRRHRSSM 120 TVEPSFISPM IPSMPVLKRC GSSKRILSLD LNLTPLENDL EYIFGKTFVP KIDMKFVL

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	266010_at	0.0
Expression Atlas	AT2G37430	-
AtGenExpress	AT2G37430	-
ATTED-II	AT2G37430	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269\|PubMed:9132053}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Function -- GeneRIF ? help Back to Top
ZAT11 is a dual function transcriptional regulator that positively regulates primary root growth but negatively regulates nickel tolerance. [PMID: 25163803]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT2G37430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT2G37430

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005896	0.0	AC005896.3 Arabidopsis thaliana chromosome 2 clone F3G5 map ve018, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	X98672	0.0	X98672.1 A.thaliana mRNA for ZAT11 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_181279.1	1e-131	C2H2 and C2HC zinc fingers superfamily protein
Swissprot	Q9SLD4	1e-132	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	A0A178VNJ8	1e-130	A0A178VNJ8_ARATH; ZAT11
STRING	AT2G37430.1	1e-130	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150
Representative plant	OGRP131	15	149

Link Out ? help Back to Top
Phytozome	AT2G37430.1
Entrez Gene	818319
iHOP	AT2G37430
wikigenes	AT2G37430

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Goda H, et al. Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis. Plant Physiol., 2004. 134(4): p. 1555-73 [PMID:15047898] Guan Y,Nothnagel EA Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. Plant Physiol., 2004. 135(3): p. 1346-66 [PMID:15235117] Englbrecht CC,Schoof H,B Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics, 2004. 5(1): p. 39 [PMID:15236668] Gechev TS,Minkov IN,Hille J Hydrogen peroxide-induced cell death in Arabidopsis: transcriptional and mutant analysis reveals a role of an oxoglutarate-dependent dioxygenase gene in the cell death process. IUBMB Life, 2005. 57(3): p. 181-8 [PMID:16036580] Taki N, et al. 12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis. Plant Physiol., 2005. 139(3): p. 1268-83 [PMID:16258017] Thilmony R,Underwood W,He SY Genome-wide transcriptional analysis of the Arabidopsis thaliana interaction with the plant pathogen Pseudomonas syringae pv. tomato DC3000 and the human pathogen Escherichia coli O157:H7. Plant J., 2006. 46(1): p. 34-53 [PMID:16553894] Mittler R, et al. Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress. FEBS Lett., 2006. 580(28-29): p. 6537-42 [PMID:17112521] Lee J, et al. Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell, 2007. 19(3): p. 731-49 [PMID:17337630] Libault M,Wan J,Czechowski T,Udvardi M,Stacey G Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11 [PMID:17722694] Gandia-Herrero F, et al. Detoxification of the explosive 2,4,6-trinitrotoluene in Arabidopsis: discovery of bifunctional O- and C-glucosyltransferases. Plant J., 2008. 56(6): p. 963-74 [PMID:18702669] Liu XM, et al. ZAT11, a zinc finger transcription factor, is a negative regulator of nickel ion tolerance in Arabidopsis. Plant Cell Rep., 2014. 33(12): p. 2015-21 [PMID:25163803] Meissner R,Michael AJ Isolation and characterisation of a diverse family of Arabidopsis two and three-fingered C2H2 zinc finger protein genes and cDNAs. Plant Mol. Biol., 1997. 33(4): p. 615-24 [PMID:9132053]