PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G40740.2
Common NameATWRKY55, WRKY55
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 248aa    MW: 27467.2 Da    PI: 8.4213
Description WRKY DNA-binding protein 55
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G40740.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY45.41.6e-141471882058
                  S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY  20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                    r+YYrCt++   +Cp+kk+v+r ++dp ++ +tY+g+H++
  AT2G40740.2 147 RRRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTC 188
                  4599*******999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007749.1E-11138190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-14144189IPR003657WRKY domain
PfamPF031061.8E-13146188IPR003657WRKY domain
SuperFamilySSF1182907.59E-13147189IPR003657WRKY domain
PROSITE profilePS5081111.153149186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000084anatomyplant sperm cell
PO:0000293anatomyguard cell
PO:0009029anatomystamen
PO:0009047anatomystem
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MYSYKKISYQ MEEVMSMIFH GMKLVKSLES SLPEKPPESL LTSLDEIVKT FSDANERLKM  60
LLEIKNSETA LNKTKPVIVS VANQMLMQME PGLMQEYWLR YGGSTSSQGT EAMFQTQLMA  120
VDGGGERNLT AAVERSGASG SSTPRQRRRA YYRCTHQKLY NCPAKKQVQR LNDDPFTFRV  180
TYRGSHTCYN STAPTASSAT PSTIPISSVT TGHSVDYGLA VVDMADVMFG SGGVGTNMDF  240
IFPKNDPS
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible266052_at1e-125
Expression AtlasAT2G40740-
AtGenExpressAT2G40740-
ATTED-IIAT2G40740-
Functional Description ? help Back to Top
Source Description
TAIRmember of WRKY Transcription Factor; Group III
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G40740.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G40740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565740.0DQ056574.1 Arabidopsis thaliana WRKY family transcription factor (At2g40740) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001078033.10.0WRKY DNA-binding protein 55
SwissprotQ9SHB51e-179WRK55_ARATH; WRKY transcription factor 55
TrEMBLQ4PSR20.0Q4PSR2_ARATH; WRKY DNA-binding protein 55
STRINGAT2G40740.11e-178(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Eulgem T,Rushton PJ,Robatzek S,Somssich IE
    The WRKY superfamily of plant transcription factors.
    Trends Plant Sci., 2000. 5(5): p. 199-206
    [PMID:10785665]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Hass C, et al.
    The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis.
    EMBO J., 2004. 23(16): p. 3290-302
    [PMID:15282545]
  4. Tosti N, et al.
    Gene expression profiles of O3-treated Arabidopsis plants.
    Plant Cell Environ., 2006. 29(9): p. 1686-702
    [PMID:16913859]
  5. Yamaguchi Y,Huffaker A,Bryan AC,Tax FE,Ryan CA
    PEPR2 is a second receptor for the Pep1 and Pep2 peptides and contributes to defense responses in Arabidopsis.
    Plant Cell, 2010. 22(2): p. 508-22
    [PMID:20179141]
  6. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  7. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]