PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G42410.1
Common NameATZFP11, ZFP11
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 214aa    MW: 24353.3 Da    PI: 8.988
Description zinc finger protein 11
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G42410.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014971123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  AT2G42410.1 49 YTCSFCRREFRSAQALGGHMNVH 71
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-64675No hitNo description
Gene3DG3DSA:3.30.160.608.9E-44774IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00614971IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-54972IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2194976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKRTHLASFS NRDKTQEEEG EDGNGDNRVI MNHYKNYEAG LIPWPPKNYT CSFCRREFRS  60
AQALGGHMNV HRRDRAKLRQ IPSWLFEPHH HTPIANPNPN FSSSSSSSTT TAHLEPSLTN  120
QRSKTTPFPS ARFDLLDSTT SYGGLMMDRE KNKSNVCSRE IKKSAIDACH SVRCEISRGD  180
LMNKKDDQVM GLELGMSLRN PNQVLDLELR LGYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-134471229superman protein
2l1o_A6e-134471229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184059640.0
Genevisible265878_at0.0
Expression AtlasAT2G42410-
AtGenExpressAT2G42410-
ATTED-IIAT2G42410-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|Ref.4}.
Functional Description ? help Back to Top
Source Description
TAIREncodes a zinc finger protein ZFP11. Overexpression of ZFP11 causes mortality and a deformed phenotype.
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G42410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G42410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0059560.0AC005956.4 Arabidopsis thaliana chromosome 2 clone MHK10 map EG05C12, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001324609.11e-161zinc finger protein 11
RefseqNP_001324610.11e-162zinc finger protein 11
RefseqNP_181770.11e-162zinc finger protein 11
SwissprotQ9SLB81e-163ZFP11_ARATH; Zinc finger protein 11
TrEMBLA0A1P8B0T01e-160A0A1P8B0T0_ARATH; Zinc finger protein 11
STRINGAT2G42410.11e-161(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Representative plantOGRP5761581
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Kim J,Shiu SH,Thoma S,Li WH,Patterson SE
    Patterns of expansion and expression divergence in the plant polygalacturonase gene family.
    Genome Biol., 2006. 7(9): p. R87
    [PMID:17010199]
  4. Tavva VS,Palli SR,Dinkins RD,Collins GB
    Improvement of a monopartite ecdysone receptor gene switch and demonstration of its utility in regulation of transgene expression in plants.
    FEBS J., 2008. 275(9): p. 2161-76
    [PMID:18384377]
  5. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]