PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G11580.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 230aa    MW: 26690.9 Da    PI: 9.635
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G11580.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.59.5e-3229142199
                  EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+k ltpsdv+k++rlv+pk++ae++                  +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v F+
  AT3G11580.2  29 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnnnnnnggsgddVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQ 126
                  99***************************9998888887774455699************************************************** PP

                  E-SS.SEE..EEEEE-S CS
           B3  84 ldgr.sefelvvkvfrk 99 
                  ++ r +  +l+++++r+
  AT3G11580.2 127 RH-RfDLHRLFIGWRRR 142
                  65.44788889999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-4118150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-3027143IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-2528133No hitNo description
SMARTSM010193.7E-2429143IPR003340B3 DNA binding domain
PfamPF023624.7E-2929142IPR003340B3 DNA binding domain
PROSITE profilePS5086312.99929143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSVNHYHNTL SLHHHHQNDV AIAQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN  60
NNNGGSGDDV ATTEKGMLLS FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLDAG  120
DVVFFQRHRF DLHRLFIGWR RRGEASSSPA VSVVSQEALV NTTAYWSGLT TPYRQVHAST  180
TYPNIHQEYS HYGKFKPFIS SFVFSFSLIY MSDLYSSLFS FKICLFHKNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-50221421113B3 domain-containing transcription factor NGA1
5os9_B6e-50221421113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.397240.0leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453383820.0
Genevisible259293_at8e-98
Expression AtlasAT3G11580-
AtGenExpressAT3G11580-
ATTED-IIAT3G11580-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G11580.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G11580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0081530.0AC008153.5 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete sequence.
GenBankBT0293710.0BT029371.1 Arabidopsis thaliana At3g11580 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319524.11e-173AP2/B3-like transcriptional factor family protein
RefseqNP_001327713.11e-173AP2/B3-like transcriptional factor family protein
RefseqNP_850559.11e-173AP2/B3-like transcriptional factor family protein
SwissprotQ8RYD31e-144Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A178VH521e-146A0A178VH52_ARATH; Uncharacterized protein
STRINGAT3G11580.11e-142(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Takase T, et al.
    ydk1-D, an auxin-responsive GH3 mutant that is involved in hypocotyl and root elongation.
    Plant J., 2004. 37(4): p. 471-83
    [PMID:14756757]
  3. Hampton CR, et al.
    Cesium toxicity in Arabidopsis.
    Plant Physiol., 2004. 136(3): p. 3824-37
    [PMID:15489280]
  4. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  5. Ikeda M,Ohme-Takagi M
    A novel group of transcriptional repressors in Arabidopsis.
    Plant Cell Physiol., 2009. 50(5): p. 970-5
    [PMID:19324928]
  6. Gaudinier A, et al.
    Enhanced Y1H assays for Arabidopsis.
    Nat. Methods, 2011. 8(12): p. 1053-5
    [PMID:22037706]
  7. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  8. Zhang Y, et al.
    Transcription factors SOD7/NGAL2 and DPA4/NGAL3 act redundantly to regulate seed size by directly repressing KLU expression in Arabidopsis thaliana.
    Plant Cell, 2015. 27(3): p. 620-32
    [PMID:25783029]