PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G16280.1
Common NameERF036, MYA6.9, T02O04.22
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 236aa    MW: 26204.8 Da    PI: 4.4926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G16280.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.8e-1759109155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr ++ +g+Wv+eIr p++   ++r++lg+f ta++Aa+a++ a++ ++g
  AT3G16280.1  59 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTFVTADMAARAHDVAALTIKG 109
                  68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-1259109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3160118IPR001471AP2/ERF domain
PROSITE profilePS5103222.53760117IPR001471AP2/ERF domain
SMARTSM003805.2E-3560123IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2060118IPR016177DNA-binding domain
PRINTSPR003673.4E-106172IPR001471AP2/ERF domain
CDDcd000183.83E-3261119No hitNo description
PRINTSPR003673.4E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009046anatomyflower
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTSLNSSASP TSSSSDQSDA TTTTSTHLSE EEAPPRNNNT RKRRRDSSSA SSSSSMQHPV  60
YRGVRMRSWG KWVSEIRQPR KKTRIWLGTF VTADMAARAH DVAALTIKGS SAVLNFPELA  120
SLFPRPASSS PHDIQTAAAE AAAMVVEEKL LEKDEAPEAP PSSESSYVAA ESEDEERLEK  180
IVELPNIEEG SYDESVTSRA DLAYSEPFDC WVYPPVMDFY EEISEFNFVE LWSFNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1849117372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14044RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.501890.0floral meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453385820.0
Genevisible259374_at0.0
Expression AtlasAT3G16280-
AtGenExpressAT3G16280-
ATTED-IIAT3G16280-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G16280.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G16280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230460.0AB023046.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYA6.
GenBankATAC0016450.0AC001645.1 Arabidopsis thaliana chromosome III BAC T02O04 genomic sequence, complete sequence.
GenBankAY5608460.0AY560846.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g16280) mRNA, complete cds.
GenBankAY9951520.0AY995152.1 Arabidopsis thaliana AP2/EREBP transcription factor family protein mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001327746.11e-172Integrase-type DNA-binding superfamily protein
SwissprotQ9LU181e-173ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLA0A1I9LT941e-171A0A1I9LT94_ARATH; Integrase-type DNA-binding superfamily protein
STRINGAT3G16280.11e-171(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Menges M,Hennig L,Gruissem W,Murray JA
    Cell cycle-regulated gene expression in Arabidopsis.
    J. Biol. Chem., 2002. 277(44): p. 41987-2002
    [PMID:12169696]
  3. Folta KM,Pontin MA,Karlin-Neumann G,Bottini R,Spalding EP
    Genomic and physiological studies of early cryptochrome 1 action demonstrate roles for auxin and gibberellin in the control of hypocotyl growth by blue light.
    Plant J., 2003. 36(2): p. 203-14
    [PMID:14535885]
  4. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  5. Feng JX, et al.
    An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family.
    Plant Mol. Biol., 2005. 59(6): p. 853-68
    [PMID:16307362]
  6. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]