PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G18960.1
Common NameK13E13.7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 209aa    MW: 24091.5 Da    PI: 7.8347
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G18960.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.41.9e-1630119197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffk  +ps + k +++ +p +f++  g+k   s  +tle++ g + ++kl  ++ ++++++ +GW+eF++a+ ++eg f++F+++++s+f  +v +f
  AT3G18960.1  30 FFKLVLPSTM-KDKMMKIPPRFVKLQGSK--LSEVVTLETPAGFKRSIKL--KRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSF--RVIIF 119
                  6676656555.5556********555554..7789***************..********************************999999..77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2324124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-2224124IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-1728120No hitNo description
PROSITE profilePS5086312.95729122IPR003340B3 DNA binding domain
SMARTSM010194.9E-2030122IPR003340B3 DNA binding domain
PfamPF023627.6E-1530120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVTTQNTKAR VTSVSHRRSQ QDPESPVKKF FKLVLPSTMK DKMMKIPPRF VKLQGSKLSE  60
VVTLETPAGF KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE GHFLLFEYKE NSSFRVIIFN  120
VSACETKYPL DAVHIIDSDD DIIDITGKEF VGTQGTRKNN QSVNGGDTEH KSKKRSRDIE  180
LDKILHDLDV MNPMHVLKEE EEDKRVFRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.664750.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425649920.0
Genevisible256918_s_at1e-159
Expression AtlasAT3G18960-
AtGenExpressAT3G18960-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G18960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G08330
IntActSearch Q84R27
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G18960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2296810.0AK229681.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-04-N20.
GenBankBT0061390.0BT006139.1 Arabidopsis thaliana clone RAFL21-04-N20 (R51235) unknown protein (At3g18960) mRNA, complete cds.
GenBankBT0085410.0BT008541.1 Arabidopsis thaliana clone U51235 unknown protein (At3g18960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188526.21e-154AP2/B3-like transcriptional factor family protein
SwissprotQ84R271e-155Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBLA0A178VGT71e-152A0A178VGT7_ARATH; Uncharacterized protein
STRINGAT3G18960.11e-153(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Representative plantOGRP20511436
Publications ? help Back to Top
  1. Duque P,Chua NH
    IMB1, a bromodomain protein induced during seed imbibition, regulates ABA- and phyA-mediated responses of germination in Arabidopsis.
    Plant J., 2003. 35(6): p. 787-99
    [PMID:12969431]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  4. Cui H,Benfey PN
    Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root.
    Plant J., 2009. 58(6): p. 1016-27
    [PMID:19228333]
  5. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  6. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]