PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G20750.1
Common NameGATA29, MOE17.6
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 208aa    MW: 23131.3 Da    PI: 8.371
Description GATA transcription factor 29
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G20750.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.4e-19159195135
         GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+  nC++ +Tp+WRrgp g+k+LCnaCG+++rk+++
  AT3G20750.1 159 CTnmNCNALNTPMWRRGPLGPKSLCNACGIKFRKEEE 195
                  55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-10155204IPR000679Zinc finger, GATA-type
PfamPF003202.0E-16159195IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-10162195No hitNo description
Gene3DG3DSA:3.30.50.101.7E-12162195IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.65E-10163192No hitNo description
PROSITE profilePS5011411.358163191IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEPELDLTLK LGLPNSTVET HLTLSPPTTT TDQGTNVVDG GEVINHRRGL LGDDEVIHNE  60
PTRNNVEFNI RIYNYVFQQF VGAPNTLNFA PYPMPPSPAP APETPPVSDE YVLIDVPARR  120
ARRNNSTVMT NSWKENATPK RIRGCGGFCG GRIEGMKKCT NMNCNALNTP MWRRGPLGPK  180
SLCNACGIKF RKEEERKAKR NVVIVLDD
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT3G20750
AtGenExpressAT3G20750
Functional Description ? help Back to Top
Source Description
TAIREncodes a member of the GATA factor family of zinc finger transcription factors.
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G20750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G20750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936250.0AB493625.1 Arabidopsis thaliana At3g20750 mRNA for hypothetical protein, partial cds, clone: RAAt3g20750.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188711.11e-153GATA transcription factor 29
SwissprotQ9LT451e-154GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A178VKN61e-152A0A178VKN6_ARATH; GATA29
STRINGAT3G20750.11e-153(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Representative plantOGRP6817287
Publications ? help Back to Top
  1. Reyes JC,Muro-Pastor MI,Florencio FJ
    The GATA family of transcription factors in Arabidopsis and rice.
    Plant Physiol., 2004. 134(4): p. 1718-32
    [PMID:15084732]
  2. Bi YM, et al.
    Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity.
    Plant J., 2005. 44(4): p. 680-92
    [PMID:16262716]
  3. Manfield IW,Devlin PF,Jen CH,Westhead DR,Gilmartin PM
    Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family.
    Plant Physiol., 2007. 143(2): p. 941-58
    [PMID:17208962]
  4. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]