PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G22100.1
Common NameBHLH117, EN140, MZN24.31
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 252aa    MW: 28341.1 Da    PI: 6.6349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G22100.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.6e-081431801355
                  HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R++i +++  L +l+P+      +K++ a++Le+  +YIk Lq
  AT3G22100.1 143 RRKISDKIRSLEKLMPWE-----RKMNLAMTLEESHKYIKFLQ 180
                  89***************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.947130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-7142188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-9143186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-5143180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.49E-4143184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
METPAYDFDS LTDLPPLPPS DFTPSNAFTF PDHNLDFSFL DSTLSLLNRH HLSESTRLEQ  60
IFYDSTHTQL FHNDDTTTTT TPFLHLPDLK SIDAVEEPTT MKLFPSLSPP LPAAKRQKLN  120
STSSSTTSGS PTASNDGGII TKRRKISDKI RSLEKLMPWE RKMNLAMTLE ESHKYIKFLQ  180
SQIASLRWMP LESVYNTAGE VGETDLLKSL TRQQILQVLA NSPGSRNVLS SRGVCVFSYE  240
QLLSLKTMSR NL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184032580.0
Expression AtlasAT3G22100-
AtGenExpressAT3G22100-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G22100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G22100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0286220.0AB028622.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MZN24.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188848.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9LRJ40.0BH117_ARATH; Transcription factor bHLH117
TrEMBLA0A178VFY00.0A0A178VFY0_ARATH; Uncharacterized protein
STRINGAT3G22100.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Representative plantOGRP1126656
Publications ? help Back to Top
  1. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  2. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  3. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  4. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]