PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT3G23220.1

Common Name

ERF095, ESE1, K14B15.13

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ERF

Protein Properties

Length: 139aa MW: 15708.1 Da PI: 5.0434

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT3G23220.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57	4.9e-18	13	63	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrd ++ +r++lg+f tae+Aa+a+++a+ ++g AT3G23220.1 13 KYRGVRKRP-WGKYAAEIRD----SaRHgARVWLGTFNTAEDAARAYDRAAFGMRG 63 7******.******....33236********************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.2E-13	13	63	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-34	13	77	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.604	13	71	IPR001471	AP2/ERF domain
CDD	cd00018	4.33E-18	13	72	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.1E-31	13	73	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-23	13	73	IPR016177	DNA-binding domain
PRINTS	PR00367	1.5E-11	14	25	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-11	37	53	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009873	Biological Process	ethylene-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MERIESYNTN EMKYRGVRKR PWGKYAAEIR DSARHGARVW LGTFNTAEDA ARAYDRAAFG 60 MRGQRAILNF PHEYQMMKDG PNGSHENAVA SSSSGYRGGG GGDDGREVIE FEYLDDSLLE 120 ELLDYGERSN QDNCNDANR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-36	13	118	14	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	145338853	0.0
Genevisible	257917_at	0.0
Expression Atlas	AT3G23220	-
AtGenExpress	AT3G23220	-
ATTED-II	AT3G23220	-

Functional Description ? help Back to Top
Source	Description
TAIR	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Function -- GeneRIF ? help Back to Top
The transcriptional complex of EIN3-ESE1 is a crucial event in the salt response, thereby connecting the transcriptional regulation of EIN3 and the downstream protein ESE1 in the salt response.[ESE1] [PMID: 21832142] Data show that the HD-Zip protein Athb-21 and B-3 AP2/ERF transcription factor ESE1 are interact with the abscisic acid responsive element binding factor AREB2/ABF4, which binds to a G-box absolutely required for expression of the COX5b-1 gene. [PMID: 22669746]

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00373	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT3G23220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Regulation -- Hormone ? help Back to Top
Source	Hormone
AHD	ethylene

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT3G23220

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB025608	0.0	AB025608.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15.
GenBank	AY974196	0.0	AY974196.1 Arabidopsis thaliana clone At3g23220 AP2/EREBP transcription factor mRNA, complete cds.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_188963.2	2e-99	Integrase-type DNA-binding superfamily protein
Swissprot	Q9LTC6	1e-100	ERF95_ARATH; Ethylene-responsive transcription factor ERF095
TrEMBL	A0A178VAV2	2e-62	A0A178VAV2_ARATH; ESE1
STRING	AT3G23220.1	6e-99	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650
Representative plant	OGRP6	16	1718

Link Out ? help Back to Top
Phytozome	AT3G23220.1
Entrez Gene	821900
iHOP	AT3G23220
wikigenes	AT3G23220

Publications ? help Back to Top
Fujimoto SY,Ohta M,Usui A,Shinshi H,Ohme-Takagi M Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell, 2000. 12(3): p. 393-404 [PMID:10715325] Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] O Identification of Arabidopsis ethylene-responsive element binding factors with distinct induction kinetics after pathogen infection. Plant Physiol., 2002. 128(4): p. 1313-22 [PMID:11950980] Feng JX, et al. An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. Plant Mol. Biol., 2005. 59(6): p. 853-68 [PMID:16307362] Nakano T,Suzuki K,Fujimura T,Shinshi H Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol., 2006. 140(2): p. 411-32 [PMID:16407444] Ma S,Gong Q,Bohnert HJ Dissecting salt stress pathways. J. Exp. Bot., 2006. 57(5): p. 1097-107 [PMID:16510518] Panjabi P,Burma PK,Pental D Use of the transposable element Ac/Ds in conjunction with Spm/dSpm for gene tagging allows extensive genome coverage with a limited number of starter lines: functional analysis of a four-element system in Arabidopsis thaliana. Mol. Genet. Genomics, 2006. 276(6): p. 533-43 [PMID:17004082] Ou B, et al. A high-throughput screening system for Arabidopsis transcription factors and its application to Med25-dependent transcriptional regulation. Mol Plant, 2011. 4(3): p. 546-55 [PMID:21343311] Zhang L, et al. An AP2 domain-containing gene, ESE1, targeted by the ethylene signaling component EIN3 is important for the salt response in Arabidopsis. Plant Physiol., 2011. 157(2): p. 854-65 [PMID:21832142] Comelli RN,Welchen E,Kim HJ,Hong JC,Gonzalez DH Delta subclass HD-Zip proteins and a B-3 AP2/ERF transcription factor interact with promoter elements required for expression of the Arabidopsis cytochrome c oxidase 5b-1 gene. Plant Mol. Biol., 2012. 80(2): p. 157-67 [PMID:22669746] Quan R, et al. EIN3 and SOS2 synergistically modulate plant salt tolerance. Sci Rep, 2017. 7: p. 44637 [PMID:28300216] Riechmann JL,Meyerowitz EM The AP2/EREBP family of plant transcription factors. Biol. Chem., 1998. 379(6): p. 633-46 [PMID:9687012]