PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G27940.1
Common NameASL28, K24A2.3, LBD26
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 153aa    MW: 17600.5 Da    PI: 9.7245
Description LOB domain-containing protein 26
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G27940.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.61.4e-265103199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +C++C++++++C+++C++a  fp+++ +kf +v+++FG ++++ +lk+l++ er d++++l+yeA+ +  +P ++  +++ +l +   q+++e++++k
  AT3G27940.1   5 PCEVCRFQNKQCVNNCMFALLFPSSDLEKFDVVNRIFGLETLTFYLKDLSPMERIDTTRTLYYEAKPCFLNPPKNPSKFLEALLNYPYQKAEEVSKTK 102
                  7*********************************************************************************************9988 PP

       DUF260  99 e 99 
                  +
  AT3G27940.1 103 K 103
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.5634105IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-215102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009025anatomyvascular leaf
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MNANPCEVCR FQNKQCVNNC MFALLFPSSD LEKFDVVNRI FGLETLTFYL KDLSPMERID  60
TTRTLYYEAK PCFLNPPKNP SKFLEALLNY PYQKAEEVSK TKKLLASYSR PCVVLALPAP  120
KYTQSKSKPS VLRKRKRKTK SSDESAIRVV EDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137RKRKRK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425652560.0
Expression AtlasAT3G27940-
AtGenExpressAT3G27940-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G27940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G27940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738610.0AB473861.1 Arabidopsis thaliana ASL28 mRNA for ASYMMETRIC LEAVES2-like 28 protein, complete cds.
GenBankAP0013020.0AP001302.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K24A2.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001326100.11e-108LOB domain-containing protein 26
RefseqNP_001326101.11e-108LOB domain-containing protein 26
RefseqNP_189433.11e-108LOB domain-containing protein 26
SwissprotQ9LIJ01e-109LBD26_ARATH; LOB domain-containing protein 26
TrEMBLA0A178VCA61e-98A0A178VCA6_ARATH; LBD26
STRINGAT3G27940.11e-107(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2101245
Publications ? help Back to Top
  1. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  2. Iwakawa H, et al.
    The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper.
    Plant Cell Physiol., 2002. 43(5): p. 467-78
    [PMID:12040093]
  3. Shuai B,Reynaga-Peña CG,Springer PS
    The lateral organ boundaries gene defines a novel, plant-specific gene family.
    Plant Physiol., 2002. 129(2): p. 747-61
    [PMID:12068116]
  4. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  5. Matsumura Y,Iwakawa H,Machida Y,Machida C
    Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members.
    Plant J., 2009. 58(3): p. 525-37
    [PMID:19154202]