PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G44350.1
Common Nameanac061, NAC061, T22K7.30
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 228aa    MW: 25304.3 Da    PI: 7.5052
Description NAC domain containing protein 61
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G44350.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.84.2e-4061362128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   +GfrF Pt+ el+++yL+ ++ g + ++++ i+ +d+++veP +Lp+    +++++ ++w fF++r++++a+g r++r+t sgyWkatg+  +v+s 
  AT3G44350.1   6 SVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWIFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSP 103
                  68***************************999**************9656766667888*************************************** PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++++g+kkt+vfy+g+ap+g+kt+W m+ey++
  AT3G44350.1 104 DNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 136
                  *******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-414141IPR003441NAC domain
PROSITE profilePS5100541.7425156IPR003441NAC domain
PfamPF023651.5E-197135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009047anatomystem
PO:0025022anatomycollective leaf structure
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGEELSVGFR FYPTEVELLT YYLRIQLGGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR  60
GDAEQWIFFV PRQEREARGG RPSRTTGSGY WKATGSPGPV FSPDNRVIGV KKTMVFYTGK  120
APTGRKTKWK MNEYKAVETA SVSTIPKSGS SRAFDRRPTE AYAIERNLPS NGVETSSRAT  180
ISTSPETSHS GGNQVDLPVN ATTITQSISD MVDELSQPFW EWEQMNWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-31513817144NO APICAL MERISTEM PROTEIN
1ut4_B9e-31513817144NO APICAL MERISTEM PROTEIN
1ut7_A9e-31513817144NO APICAL MERISTEM PROTEIN
1ut7_B9e-31513817144NO APICAL MERISTEM PROTEIN
3swm_A1e-30513820147NAC domain-containing protein 19
3swm_B1e-30513820147NAC domain-containing protein 19
3swm_C1e-30513820147NAC domain-containing protein 19
3swm_D1e-30513820147NAC domain-containing protein 19
3swp_A1e-30513820147NAC domain-containing protein 19
3swp_B1e-30513820147NAC domain-containing protein 19
3swp_C1e-30513820147NAC domain-containing protein 19
3swp_D1e-30513820147NAC domain-containing protein 19
4dul_A9e-31513817144NAC domain-containing protein 19
4dul_B9e-31513817144NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.493940.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible252681_at0.0
Expression AtlasAT3G44350-
AtGenExpressAT3G44350-
ATTED-IIAT3G44350-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G44350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G44350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386411e-157AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBankCP0026861e-157CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001118771.11e-165NAC domain containing protein 61
SwissprotQ9M2901e-170NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLB3H5061e-163B3H506_ARATH; NAC domain containing protein 61
STRINGAT3G44350.21e-164(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]
  3. Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
    Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.
    Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11
    [PMID:17722694]