PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT3G45150.1

Common Name

T14D3.90, TCP16

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 165aa MW: 17997.8 Da PI: 9.6318

Description

TCP domain protein 16

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT3G45150.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92	1.2e-28	12	141	3	115
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg.......... 88 +++++ +++h k ggRdRR+R++ ++a ++F L++eLGf++d++t+ WLlq+a+pai ++tg +++s+++ +++++ s +++ + AT3G45150.1 12 KARRTPKDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAEPAIFAATGHgvTTTSNEDIQPNRNFPSYTFNGDNisnnvfpctv 109 567889*********************************************************66444443444444444444333335566777777 PP TCP 89 .....kaaksaakskksqksaasalnlakesr 115 +++ + ++ +++++++ + ++++ + AT3G45150.1 110 vntghRQMVFPVSTMTDHAPSTNYSTISDNYN 141 77777555555555555555555555555333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	23.447	17	71	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.8E-24	17	87	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007275	Biological Process	multicellular organism development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MDSKNGINNS QKARRTPKDR HLKIGGRDRR IRIPPSVAPQ LFRLTKELGF KTDGETVSWL 60 LQNAEPAIFA ATGHGVTTTS NEDIQPNRNF PSYTFNGDNI SNNVFPCTVV NTGHRQMVFP 120 VSTMTDHAPS TNYSTISDNY NSTFNGNATA SDTTSAATTT ATTTV

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	71036781	0.0
Expression Atlas	AT3G45150	-
AtGenExpress	AT3G45150	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in developing microspores during pollen development. First observed at the tetrad stage, and later accumulates in an early unicellular stage. Levels decrease as the pollen grain matures. {ECO:0000269\|PubMed:16786299}.
Uniprot	TISSUE SPECIFICITY: Mostly in anther in young buds. {ECO:0000269\|PubMed:16786299}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Function -- GeneRIF ? help Back to Top
TCP16, a putative transcription factor, plays a crucial role in early processes in pollen development. [TCP16] [PMID: 16786299] TCP16 is able to modulate the induction of meristematic programs and the differentiation state of plant cells. [PMID: 27404135]

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00390	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT3G45150.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT1G14920

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT3G45150

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138649	0.0	AL138649.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_190101.1	1e-119	TCP domain protein 16
Swissprot	Q9M1U4	1e-120	TCP16_ARATH; Transcription factor TCP16
TrEMBL	A0A178VGQ1	4e-99	A0A178VGQ1_ARATH; TCP16
STRING	AT3G45150.1	1e-118	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16
Representative plant	OGRP922	14	59

Link Out ? help Back to Top
Phytozome	AT3G45150.1
Entrez Gene	823651
iHOP	AT3G45150
wikigenes	AT3G45150

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Takeda T, et al. RNA interference of the Arabidopsis putative transcription factor TCP16 gene results in abortion of early pollen development. Plant Mol. Biol., 2006. 61(1-2): p. 165-77 [PMID:16786299] Aguilar-Martínez JA,Poza-Carrión C,Cubas P Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell, 2007. 19(2): p. 458-72 [PMID:17307924] Klopffleisch K, et al. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Mol. Syst. Biol., 2011. 7: p. 532 [PMID:21952135] Causier B,Ashworth M,Guo W,Davies B The TOPLESS interactome: a framework for gene repression in Arabidopsis. Plant Physiol., 2012. 158(1): p. 423-38 [PMID:22065421] Viola IL,Reinheimer R,Ripoll R,Manassero NG,Gonzalez DH Determinants of the DNA binding specificity of class I and class II TCP transcription factors. J. Biol. Chem., 2012. 287(1): p. 347-56 [PMID:22074922] Yang X, et al. Evolution of double positive autoregulatory feedback loops in CYCLOIDEA2 clade genes is associated with the origin of floral zygomorphy. Plant Cell, 2012. 24(5): p. 1834-47 [PMID:22649271] Efroni I, et al. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474] Mar Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. Plant Physiol., 2014. 166(2): p. 1022-32 [PMID:25118255] Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]