PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G46070.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 170aa    MW: 18754.3 Da    PI: 8.8553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G46070.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-0586108123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+Cg  F+    L  H+r+H
  AT3G46070.1  86 HTCPICGLEFPMGQALGGHMRKH 108
                  79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.16E-734108No hitNo description
PfamPF139121.2E-93560IPR007087Zinc finger, C2H2
PROSITE profilePS501579.123663IPR007087Zinc finger, C2H2
SMARTSM003552.13658IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
PfamPF139129.8E-1185109IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.82486113IPR007087Zinc finger, C2H2
SMARTSM003550.03486108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0009046anatomyflower
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVAESDNRDL TVDTAASCLM LLSGIGEHDG RKKRVFRCKT CERDFDSFQA LGGHRASHSK  60
LTNSDDKSLP GSPKKKPKTT TTTTAHTCPI CGLEFPMGQA LGGHMRKHRN EKEREKASNV  120
LVTHSFMPET TTVTTLKKSS SGKRVACLDF DLTSVESFVN TELELGRTMY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278PKKKPKT
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible252567_at0.0
Expression AtlasAT3G46070-
AtGenExpressAT3G46070-
ATTED-IIAT3G46070-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00393DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G46070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G46070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3557750.0AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankDQ4467390.0DQ446739.1 Arabidopsis thaliana clone pENTR221-At3g46070 zinc finger family protein (At3g46070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190193.11e-123C2H2-type zinc finger family protein
SwissprotQ9LX856e-71ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0MF101e-122A0MF10_ARATH; Uncharacterized protein (Fragment)
TrEMBLQ9LX861e-122Q9LX86_ARATH; C2H2-type zinc finger family protein
STRINGAT3G46070.11e-123(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Representative plantOGRP13115149
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yang T,Poovaiah BW
    A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants.
    J. Biol. Chem., 2002. 277(47): p. 45049-58
    [PMID:12218065]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  4. Stanley Kim H, et al.
    Transcriptional divergence of the duplicated oxidative stress-responsive genes in the Arabidopsis genome.
    Plant J., 2005. 41(2): p. 212-20
    [PMID:15634198]
  5. Mittler R, et al.
    Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress.
    FEBS Lett., 2006. 580(28-29): p. 6537-42
    [PMID:17112521]
  6. Rossel JB, et al.
    Systemic and intracellular responses to photooxidative stress in Arabidopsis.
    Plant Cell, 2007. 19(12): p. 4091-110
    [PMID:18156220]