PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G50510.1
Common NameASL25, LBD28, T20E23.110
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 198aa    MW: 22464.5 Da    PI: 6.0079
Description LOB domain-containing protein 28
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G50510.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.72e-38121111100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC++dCv+apyfp+++  ++++vhk+FGas+v  l+++l++ +re am++l++eA+++a+dPv+G++g+i +l +q++ l+++la +k
  AT3G50510.1  12 PCAACKHLRRKCTEDCVFAPYFPSTKLDNYEAVHKVFGASHVATLINSLHPCQREFAMDTLAWEAQVQANDPVNGCLGIIYNLLSQIKDLEEQLAIVK 109
                  7***********************************************************************************************99 PP

       DUF260  99 ee 100
                  +e
  AT3G50510.1 110 NE 111
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.52211112IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3612109IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MMFHQMDKIS TPCAACKHLR RKCTEDCVFA PYFPSTKLDN YEAVHKVFGA SHVATLINSL  60
HPCQREFAMD TLAWEAQVQA NDPVNGCLGI IYNLLSQIKD LEEQLAIVKN ELASYCIVPT  120
FVPPPSMTNL EMHNNPMMIP EHTPNNGGCL TGQQLYNEAQ RFASTQSAQM QETQMQHDEE  180
SYRDKSSYQK FGPCFNLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-31101239127LOB family transfactor Ramosa2.1
5ly0_B5e-31101239127LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402555770.0
Expression AtlasAT3G50510-
AtGenExpressAT3G50510-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G50510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G50510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738580.0AB473858.1 Arabidopsis thaliana ASL25 mRNA for ASYMMETRIC LEAVES2-like 25 protein, complete cds.
GenBankAL1333630.0AL133363.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T20E23.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319720.11e-150LOB domain-containing protein 28
RefseqNP_190620.11e-150LOB domain-containing protein 28
SwissprotQ9SCS41e-151LBD28_ARATH; LOB domain-containing protein 28
TrEMBLA0A178VFQ11e-146A0A178VFQ1_ARATH; Uncharacterized protein
STRINGAT3G50510.11e-149(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Representative plantOGRP6016318
Publications ? help Back to Top
  1. Iwakawa H, et al.
    The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper.
    Plant Cell Physiol., 2002. 43(5): p. 467-78
    [PMID:12040093]
  2. Shuai B,Reynaga-Peña CG,Springer PS
    The lateral organ boundaries gene defines a novel, plant-specific gene family.
    Plant Physiol., 2002. 129(2): p. 747-61
    [PMID:12068116]
  3. Matsumura Y,Iwakawa H,Machida Y,Machida C
    Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members.
    Plant J., 2009. 58(3): p. 525-37
    [PMID:19154202]