PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G53600.1
Common NameF4P12_300
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 175aa    MW: 20147.2 Da    PI: 9.5911
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G53600.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-0593115123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+++F +   L  H+r+H
  AT3G53600.1  93 HKCTICDQMFGTGQALGGHMRKH 115
                  79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.01E-648115No hitNo description
PfamPF139121.4E-104873IPR007087Zinc finger, C2H2
SMARTSM003550.434971IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9724976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
SMARTSM003550.01393115IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.80893115IPR007087Zinc finger, C2H2
PfamPF139121.4E-993116IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS  60
FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ MFGTGQALGG HMRKHRTSMI  120
TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.493990.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible251950_at0.0
Expression AtlasAT3G53600-
AtGenExpressAT3G53600-
ATTED-IIAT3G53600-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. ZAT18 positively modulated drought stress tolerance
    [PMID: 28586434]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G53600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G53600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329660.0AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_190928.11e-129C2H2-type zinc finger family protein
SwissprotQ9SLD42e-75ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLQ9LFG01e-127Q9LFG0_ARATH; At3g53600
STRINGAT3G53600.11e-128(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Representative plantOGRP13115149
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ohno CK,Reddy GV,Heisler MG,Meyerowitz EM
    The Arabidopsis JAGGED gene encodes a zinc finger protein that promotes leaf tissue development.
    Development, 2004. 131(5): p. 1111-22
    [PMID:14973281]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  4. Ma S,Gong Q,Bohnert HJ
    Dissecting salt stress pathways.
    J. Exp. Bot., 2006. 57(5): p. 1097-107
    [PMID:16510518]
  5. Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
    Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.
    Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11
    [PMID:17722694]
  6. Yin M, et al.
    The Arabidopsis Cys2/His2 zinc finger transcription factor ZAT18 is a positive regulator of plant tolerance to drought stress.
    J. Exp. Bot., 2017. 68(11): p. 2991-3005
    [PMID:28586434]