PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G56520.1
Common NameT5P19_170
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 175aa    MW: 20378.7 Da    PI: 4.9584
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G56520.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.52.6e-1981411128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                  lp+GfrF+ t+ e+ +++Lkkk+ g+++++ ++ +e+ di++ +P+dLp     +e++wy+F++++ ++ t++       +  W   g++++vl+   
  AT3G56520.1   8 LPVGFRFRSTNCEISNYFLKKKALGQPMKARTIPEEChDIFSRHPHDLPGY--PSEEHWYYFCRKRDNQVTSNS------HNLWTPIGEETNVLDPkn 97 
                  79****************************77777779***********43..4689*******9887655332......347***********9866 PP

          NAM  96 kgelvglkktLvfy...........kgrapkgektdWvmheyrl 128
                  +++lvg+k+ +++              +++++ k +W+m+e +l
  AT3G56520.1  98 NDALVGIKRRFTLIaqeeeesdnicLSDDEEALKYNWFMDEISL 141
                  6677**********665554443333666777799****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-287158IPR003441NAC domain
PROSITE profilePS5100527.8078158IPR003441NAC domain
PfamPF023651.1E-109140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEPTHRALPV GFRFRSTNCE ISNYFLKKKA LGQPMKARTI PEECHDIFSR HPHDLPGYPS  60
EEHWYYFCRK RDNQVTSNSH NLWTPIGEET NVLDPKNNDA LVGIKRRFTL IAQEEEESDN  120
ICLSDDEEAL KYNWFMDEIS LPQTVANTDW VLCHIFGKKT KPETTDLSTI DSESE
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184105150.0
Genevisible251691_at0.0
Expression AtlasAT3G56520-
AtGenExpressAT3G56520-
ATTED-IIAT3G56520-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G56520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G56520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566270.0DQ056627.1 Arabidopsis thaliana no apical meristem family protein (At3g56520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191211.11e-131NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBLQ9LXY81e-129Q9LXY8_ARATH; NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
STRINGAT3G56520.11e-130(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Nakano T, et al.
    Identification of genes of the plant-specific transcription-factor families cooperatively regulated by ethylene and jasmonate in Arabidopsis thaliana.
    J. Plant Res., 2006. 119(4): p. 407-13
    [PMID:16820983]
  3. Day RC,Herridge RP,Ambrose BA,Macknight RC
    Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation.
    Plant Physiol., 2008. 148(4): p. 1964-84
    [PMID:18923020]