PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G56770.1
Common NameBHLH107, EN55, T8M16.100
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 230aa    MW: 25754.4 Da    PI: 8.4954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G56770.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.7e-104793354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r+h+e+Er+RR+riNs +++Lr+ll  +      K +K++ L k+v+ +k+L
  AT3G56770.1 47 RNHKEAERKRRARINSHLNKLRKLLSCN-----SKTDKSTLLAKVVQRVKEL 93
                 58***********************997.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.1894493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-84793IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.41E-94796No hitNo description
Gene3DG3DSA:4.10.280.104.8E-1248103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1148100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-85099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.1E-4131199No hitNo description
SuperFamilySSF550215.95E-5131202No hitNo description
CDDcd048738.22E-4132198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQPEVSDQIF YAFLTGGLCA SSTSTTVTSS SDPFATVYED KALASLRNHK EAERKRRARI  60
NSHLNKLRKL LSCNSKTDKS TLLAKVVQRV KELKQQTLEI TDETIPSETD EISVLNIEDC  120
SRGDDRRIIF KVSFCCEDRP ELLKDLMETL KSLQMETLFA DMTTVGGRTR NVLVVAADKE  180
HHGVQSVNFL QNALKSLLER SSKSVMVGHG GGGGEERLKR RRALDHIIMV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184105680.0
Expression AtlasAT3G56770-
AtGenExpressAT3G56770-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G56770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G11260
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G56770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3909210.0AL390921.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T8M16.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191236.11e-169basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9LET01e-170BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A178VE641e-167A0A178VE64_ARATH; Uncharacterized protein
STRINGAT3G56770.11e-169(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Representative plantOGRP37715106
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  3. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  4. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  5. Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
    Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.
    Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11
    [PMID:17722694]
  6. Strader LC,Monroe-Augustus M,Rogers KC,Lin GL,Bartel B
    Arabidopsis iba response5 suppressors separate responses to various hormones.
    Genetics, 2008. 180(4): p. 2019-31
    [PMID:18832358]
  7. Gong W, et al.
    The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors.
    Mol Plant, 2008. 1(1): p. 27-41
    [PMID:19802365]
  8. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  9. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]