PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G57480.1
Common NameSAP13, T8H10.80
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 249aa    MW: 27760.4 Da    PI: 8.2729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G57480.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-06221243223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp+C++ F+++ +L +Hi + H
  AT3G57480.1 221 VCPKCSRGFRDPVDLLKHIDKdH 243
                  7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.96E-12649No hitNo description
PROSITE profilePS510397.6471059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.8E-101150IPR000058Zinc finger, AN1-type
PfamPF014281.5E-131349IPR000058Zinc finger, AN1-type
SMARTSM001542.7E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.109.6E-991147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183106.28E-993145No hitNo description
PROSITE profilePS510398.05198151IPR000058Zinc finger, AN1-type
PfamPF014285.8E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.0047101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.891220248IPR007087Zinc finger, C2H2
PROSITE patternPS000280222243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CLQVYCLDHR SYMKHDCPKG NRGDVTVVIC  60
PLCAKGVRLN PDEDPNITWE KHVNTDCDPS NYEKAVKKKK CPVPRCRELL TFSNTIKCRD  120
CSIDHCLKHR FGPDHSCSGP KKPESSFSFM GFLSTNTKEA PASSSSSSRW SSLFASAEAS  180
ISRLGNDISQ KLQFASGNDG NSEKTQERNG KQNCGKVTVD VCPKCSRGFR DPVDLLKHID  240
KDHRGTSKA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.430730.0leaf| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453396120.0
Genevisible251634_at0.0
Expression AtlasAT3G57480-
AtGenExpressAT3G57480-
ATTED-IIAT3G57480-
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. Through yeast one-hybrid assay, we identified several AP2/EREBP family transcription factors that interacted with the AtSAP13 promoter. AtSAP13 and its homologues will be highly useful for developing climate resilient crops.
    [PMID: 29194659]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G57480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G57480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190960.0AK119096.1 Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete cds, clone: RAFL21-44-N05.
GenBankBT0062230.0BT006223.1 Arabidopsis thaliana At3g57480 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319783.10.0zinc finger (C2H2 type, AN1-like) family protein
RefseqNP_191307.10.0zinc finger (C2H2 type, AN1-like) family protein
SwissprotQ9SCM40.0SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLA0A178VKM11e-166A0A178VKM1_ARATH; Uncharacterized protein
TrEMBLD7LVT61e-168D7LVT6_ARALL; Uncharacterized protein
STRINGAT3G57480.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Representative plantOGRP19091520
Publications ? help Back to Top
  1. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Vij S,Tyagi AK
    Genome-wide analysis of the stress associated protein (SAP) gene family containing A20/AN1 zinc-finger(s) in rice and their phylogenetic relationship with Arabidopsis.
    Mol. Genet. Genomics, 2006. 276(6): p. 565-75
    [PMID:17033811]
  4. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  5. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  6. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]