PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G00130.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 194aa    MW: 22548.4 Da    PI: 10.1932
Description DNA-binding storekeeper protein-related transcriptional regulator
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G00130.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57347.55.2e-1530914198
       DUF573 41 vkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiWgs 98
                 +kk i+f+++k+q+v+K++rLKkKf++ vk+     ++++e++ +ke+++k f+ls +iWgs
  AT4G00130.1 30 FKKLIEFDATKNQIVTKLQRLKKKFNNAVKNarkkGQTEDEVEYAKESEKKRFDLSIMIWGS 91
                 7999**********************999887666788999*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-103090IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MMRLRRLLER MLRRCCFRDC SVRLTKSLCF KKLIEFDATK NQIVTKLQRL KKKFNNAVKN  60
ARKKGQTEDE VEYAKESEKK RFDLSIMIWG SNGVLVAGKS SKKKVAPKEM KPEETDAKVV  120
NEGLSIGREM VPFGSSCGLD ESKLTTGWEN VEDGAEKREV EEKWKKFKDK LFELLYERSV  180
LMNKTEAMMF KAES
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453398330.0
Genevisible255697_at0.0
Expression AtlasAT4G00130-
AtGenExpressAT4G00130-
ATTED-IIAT4G00130-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G00130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G00130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4467860.0DQ446786.1 Arabidopsis thaliana clone pENTR221-At4g00130 hypothetical protein (At4g00130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191924.21e-138DNA-binding storekeeper protein-related transcriptional regulator
SwissprotQ1PED21e-139STKLK_ARATH; Probable transcription factor At4g00130
TrEMBLA0A178V4N31e-110A0A178V4N3_ARATH; Uncharacterized protein
STRINGAT4G00130.11e-137(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Publications ? help Back to Top
  1. Liljegren SJ, et al.
    Control of fruit patterning in Arabidopsis by INDEHISCENT.
    Cell, 2004. 116(6): p. 843-53
    [PMID:15035986]