PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G00232.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 154aa    MW: 17665.4 Da    PI: 10.3462
Description DNA-binding storekeeper protein-related transcriptional regulator
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G00232.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57397.41.4e-3041135297
       DUF573   2 lfqrl.wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  ++q+l ws++De+++LqG++dfk+ tgk+p+ddi++ yefv +++ ++v +++++eK+++LKkK kkk++   ++k+ps s++ +qk+ e+ k+iWg
  AT4G00232.1  41 NSQMLkWSSKDEVLVLQGMLDFKSVTGKNPVDDINGAYEFVVHEYISTVIDEDFIEKMKSLKKKLKKKQRI--YDKDPSSSEPLYQKSSEWLKMIWG 135
                  689999*****************************************************************..***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-1846135IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025195anatomypollen tube cell
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDKANTNRSK VCGGSGEAKL TGKKRKNVSA KQSKKDAKKE NSQMLKWSSK DEVLVLQGML  60
DFKSVTGKNP VDDINGAYEF VVHEYISTVI DEDFIEKMKS LKKKLKKKQR IYDKDPSSSE  120
PLYQKSSEWL KMIWGYDVES ALEKPRKSKR IIKL
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible255708_at0.0
Expression AtlasAT4G00232-
AtGenExpressAT4G00232-
ATTED-IIAT4G00232-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G00232.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G00232
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1614710.0AL161471.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankDQ4467880.0DQ446788.1 Arabidopsis thaliana clone pENTR221-At4g00232 hypothetical protein (At4g00232) gene, complete cds.
GenBankF6N150.0AF069299.1 Arabidopsis thaliana BAC F6N15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_567157.11e-107DNA-binding storekeeper protein-related transcriptional regulator
SwissprotQ3EAE71e-108STKLL_ARATH; Probable transcription factor At4g00232
TrEMBLA0A178UZT01e-105A0A178UZT0_ARATH; Uncharacterized protein
STRINGAT4G00232.11e-107(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16691712
Publications ? help Back to Top
  1. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]