PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G01580.1
Common NameT15B16.18
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 190aa    MW: 22122.4 Da    PI: 7.8008
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G01580.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-1630120198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffk  +ps + k +++++p +f++  g+k   s  +tl ++ g + ++kl  ++ ++++++ +GW+eF++a+ ++eg f++F+++++s+f  +v +f+
  AT4G01580.1  30 FFKLVLPSTM-KDKMMRIPPRFVKLQGSK--LSEVVTLVTPAGYKRSIKL--KRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSF--RVIIFN 120
                  6676656555.5556********555554..7789***************..*********************************99999..887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-2324124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2424124IPR015300DNA-binding pseudobarrel domain
CDDcd100179.93E-1828120No hitNo description
PROSITE profilePS5086313.19729122IPR003340B3 DNA binding domain
SMARTSM010198.5E-2130122IPR003340B3 DNA binding domain
PfamPF023624.5E-1530121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVITRNMKAR ATSVSHRQSQ QDPESPVKKF FKLVLPSTMK DKMMRIPPRF VKLQGSKLSE  60
VVTLVTPAGY KRSIKLKRIG EEIWFHEGWS EFAEAHSIEE GHFLLFEYKK NSSFRVIIFN  120
ASACETNYPL DAVHIIDSDD DVIEITGKEF DTEHKSKKRP RDIEFDKILH DVDVMQVLKE  180
EEEDKRVLRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.344040.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible256918_s_at1e-140
Expression AtlasAT4G01580-
AtGenExpressAT4G01580-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G01580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9ZSH7
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G01580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1753330.0AK175333.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-77-L01.
GenBankBT0106040.0BT010604.1 Arabidopsis thaliana At4g01580 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192068.11e-138AP2/B3-like transcriptional factor family protein
SwissprotQ9ZSH71e-140Y4158_ARATH; B3 domain-containing protein At4g01580
TrEMBLA0A178UUC41e-122A0A178UUC4_ARATH; Uncharacterized protein
STRINGAT4G01580.11e-138(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Representative plantOGRP20511436
Publications ? help Back to Top
  1. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  3. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  4. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]