PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G03170.1
Common NameF4C21.9
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 250aa    MW: 29233.8 Da    PI: 4.2198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G03170.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.71.3e-15137238293
                  EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS. CS
           B3   2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr. 87 
                  +k+l++sdv k  ++l+l+k+ ++e        ++++ ++++++++ ++g  +++e+k+  ++++++ vlt+GWk+Fv++ gL  + Dfv+  + ++ 
  AT4G03170.1 137 KKQLMSSDVDKDqCMLMLSKEQVKEKmlpfledSENPVKGIDVSVYGPDGkvQQMEFKM--WNGDKTPVLTSGWKQFVEDYGLSmTCDFVTVWMFRHi 232
                  699*******998999********99*****9988889************555666666..**********************988899986655555 PP

                  SEE..E CS
           B3  88 sefelv 93 
                  ++++l+
  AT4G03170.1 233 KTRKLC 238
                  555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.14E-18136242No hitNo description
SMARTSM010196.4E-12136241IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-17136241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-16137230IPR015300DNA-binding pseudobarrel domain
PfamPF023628.7E-9138240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MANSTGKPTS STQEDEEATS ATEILAQLMQ DIIDREEDID DEDDIDDEVI DDEDYEVASL  60
PLLQESQANQ KQSREREEET EKNQPKRFKK QNMMKINIHD FSEETLRLIE VWYEAELDPQ  120
DIFGDNEVTR LFSRPIKKQL MSSDVDKDQC MLMLSKEQVK EKMLPFLEDS ENPVKGIDVS  180
VYGPDGKVQQ MEFKMWNGDK TPVLTSGWKQ FVEDYGLSMT CDFVTVWMFR HIKTRKLCFA  240
IHYVKFSLRD
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184121730.0
Genevisible255416_at0.0
Expression AtlasAT4G03170-
AtGenExpressAT4G03170-
ATTED-IIAT4G03170-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G03170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G03170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0052750.0AC005275.1 Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17 cM, complete sequence.
GenBankAL1614960.0AL161496.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192226.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9ZR140.0Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLA0A178V0D60.0A0A178V0D6_ARATH; Uncharacterized protein
STRINGAT4G03170.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Representative plantOGRP1051734
Publications ? help Back to Top
  1. Ditt RF, et al.
    The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens.
    Mol. Plant Microbe Interact., 2006. 19(6): p. 665-81
    [PMID:16776300]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  3. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]