PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G06746.1
Common NameDEAR5, ERF007, F15N16.2, RAP2-9, RAP2.9
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 150aa    MW: 17199 Da    PI: 10.5515
Description related to AP2 9
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G06746.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-173584255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +ykG+r +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  AT4G06746.1 35 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYKTAVAAARAYDTAVFYLRG 84
                 8******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.97E-283493No hitNo description
PROSITE profilePS5103222.3663592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-303593IPR001471AP2/ERF domain
PfamPF008471.3E-103584IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-213593IPR016177DNA-binding domain
SMARTSM003803.6E-363598IPR001471AP2/ERF domain
PRINTSPR003671.3E-113647IPR001471AP2/ERF domain
PRINTSPR003671.3E-117494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000293anatomyguard cell
PO:0009001anatomyfruit
PO:0009005anatomyroot
PO:0009010anatomyseed
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009047anatomystem
PO:0009062anatomygynoecium
PO:0020030anatomycotyledon
PO:0020100anatomyhypocotyl
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MVIQYKRKQE FPMVKEGMVM TEKPKRNLIS SNEKRYKGIR MRKWGKWVAE IREPNKRSRI  60
WLGSYKTAVA AARAYDTAVF YLRGPSARLN FPEEVFKDGN GGEGLGGDMS PTLIRKKAAE  120
VGARVDAELR LENRMVENLD MNKLPEAYGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-162994874Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.472040.0seed
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT4G06746
AtGenExpressAT4G06746
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.9). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1 and RAP2.10.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00430DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G06746.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G06746
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0731660.0AB073166.1 Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F15N16.
GenBankAY5608690.0AY560869.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g06746) mRNA, complete cds.
GenBankBT0246890.0BT024689.1 Arabidopsis thaliana At4g06746 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_849340.11e-106related to AP2 9
SwissprotQ8W3M31e-107RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLA0A178U6511e-104A0A178U651_ARATH; RAP2.9
STRINGAT4G06746.11e-105(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Tian L, et al.
    Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant development.
    Genetics, 2005. 169(1): p. 337-45
    [PMID:15371352]
  3. Devoto A, et al.
    Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions.
    Plant Mol. Biol., 2005. 58(4): p. 497-513
    [PMID:16021335]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. AbuQamar S, et al.
    Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection.
    Plant J., 2006. 48(1): p. 28-44
    [PMID:16925600]
  6. Tsutsui T, et al.
    DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis.
    J. Plant Res., 2009. 122(6): p. 633-43
    [PMID:19618250]
  7. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  8. Okamuro JK,Caster B,Villarroel R,Van Montagu M,Jofuku KD
    The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(13): p. 7076-81
    [PMID:9192694]