PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT4G09450.1

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 200aa MW: 23111.8 Da PI: 7.5564

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT4G09450.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.6	6.7e-14	92	136	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++++ +++G+g+Wk I+r+ k Rt q+ s+ qky AT4G09450.1 92 PWSEEEQRLFLEGLNKFGKGDWKNISRYCVKSRTSTQVASHAQKY 136 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.4	3	54	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.088	84	141	IPR017930	Myb domain
SuperFamily	SSF46689	2.73E-17	87	142	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-16	88	140	IPR006447	Myb domain, plants
SMART	SM00717	1.5E-9	89	139	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-10	92	136	IPR009057	Homeodomain-like
CDD	cd00167	8.46E-11	92	137	No hit	No description
Pfam	PF00249	4.7E-11	92	136	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MAAFPQWTRV DDKRFELALL QIPEGSPNFI ENIAYYLQKP VKEVEYYYCA LVHDIERIES 60 GKYVLPKYPE DDYVKLTEAG ESKGNGKKTG IPWSEEEQRL FLEGLNKFGK GDWKNISRYC 120 VKSRTSTQVA SHAQKYFARQ KQESTNTKRP SIHDMTLGVA VNVPGSNLES TGQQPHFGDQ 180 IPSNQYYPSQ ENFRGFDQRW

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT4G09450
AtGenExpress	AT4G09450

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269\|PubMed:26243618}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT4G09450.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT4G09450

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY122911	0.0	AY122911.1 Arabidopsis thaliana unknown protein (At4g09450) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_192683.1	1e-150	Duplicated homeodomain-like superfamily protein
Swissprot	Q9FNN6	2e-31	SRM1_ARATH; Transcription factor SRM1
TrEMBL	Q9M0P7	1e-149	Q9M0P7_ARATH; Duplicated homeodomain-like superfamily protein
STRING	AT4G09450.1	1e-149	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14731	7	19

Link Out ? help Back to Top
Phytozome	AT4G09450.1
Entrez Gene	826528
iHOP	AT4G09450
wikigenes	AT4G09450

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Yanhui C, et al. The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol. Biol., 2006. 60(1): p. 107-24 [PMID:16463103] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]