PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G10240.1
Common Namebbx23, DBB4, F24G24.40, STH6, T9A4.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family DBB
Protein Properties Length: 162aa    MW: 17859 Da    PI: 4.7344
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G10240.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.2e-06445539
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                  C+ +e+ e++  C +++  lC+ C  + H+        H+v
  AT4G10240.1  4 QCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEAnklfqrhHRV 45
                 7*****************************767888884444 PP
2zf-B_box29.31.7e-096097338
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38
                 ++ C+ ++e +  +fC +++ +lC+dC +++H  ++H+
  AT4G10240.1 60 APLCDICQERKGYFFCLEDRAMLCNDCDEAIHtcNSHQ 97
                 689******99********************9434487 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.883147IPR000315B-box-type zinc finger
CDDcd000211.66E-4347No hitNo description
SMARTSM003363.5E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.58458101IPR000315B-box-type zinc finger
SMARTSM003362.0E-1258101IPR000315B-box-type zinc finger
PfamPF006432.1E-76097IPR000315B-box-type zinc finger
CDDcd000212.78E-761101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0009032anatomypetal
PO:0025022anatomycollective leaf structure
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKIQCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKLFQ RHHRVALQKD AASATTASGA  60
PLCDICQERK GYFFCLEDRA MLCNDCDEAI HTCNSHQRFL LSGVQVSDQS LTENSECSTS  120
FSSETYQIQS KVSLNSQYSS EETEAGNSGE IVHKNPSVIL SP
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306813730.0
Genevisible255805_at0.0
Expression AtlasAT4G10240-
AtGenExpressAT4G10240-
ATTED-IIAT4G10240-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Function -- GeneRIF ? help Back to Top
  1. the transcriptional cascade consisting of PIF1/PIF3, HY5, and BBX23 controls photomorphogenesis.
    [PMID: 28687557]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G10240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G10240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1229160.0AY122916.1 Arabidopsis thaliana putative zinc-finger protein (At4g10240) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192762.11e-116B-box zinc finger family protein
SwissprotO826171e-117BBX23_ARATH; B-box zinc finger protein 23
TrEMBLA0A178UTH91e-115A0A178UTH9_ARATH; Bbx23
STRINGAT4G10240.11e-116(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Representative plantOGRP18041634
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Datta S, et al.
    LZF1/SALT TOLERANCE HOMOLOG3, an Arabidopsis B-box protein involved in light-dependent development and gene expression, undergoes COP1-mediated ubiquitination.
    Plant Cell, 2008. 20(9): p. 2324-38
    [PMID:18796637]
  4. Khanna R, et al.
    The Arabidopsis B-box zinc finger family.
    Plant Cell, 2009. 21(11): p. 3416-20
    [PMID:19920209]
  5. Yamawaki S,Yamashino T,Nakamichi N,Nakanishi H,Mizuno T
    Light-responsive double B-box containing transcription factors are conserved in Physcomitrella patens.
    Biosci. Biotechnol. Biochem., 2011. 75(10): p. 2037-41
    [PMID:21979077]
  6. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]