PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT4G12850.2

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

FAR1

Protein Properties

Length: 138aa MW: 15903.2 Da PI: 10.0833

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT4G12850.2	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.2	7.8e-25	25	110	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eY+k++GF vr+ + ++s +g++ r++ C+k+g+ +++++ +++++++r gCka++ vk+ek+gkw+vt++ +eHnH+l+ AT4G12850.2 25 DFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFGPNNQRS----SSSSSSSREGCKATILVKMEKSGKWVVTRFIKEHNHSLQ 110 6**************************************999888....89999*****************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-23	25	110	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MMTGDLKLDE PYVGLKFESE EEAKDFYVEY SKRLGFVVRM MQRRRSGIDG RTLARRLGCN 60 KQGFGPNNQR SSSSSSSSRE GCKATILVKM EKSGKWVVTR FIKEHNHSLQ FIGSSSYDSF 120 VRFQSLYLWV FLICFAIT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.33440	0.0	flower\| seed

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT4G12850
AtGenExpress	AT4G12850

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT4G12850.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT4G12850

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL049640	0.0	AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBank	AL161535	0.0	AL161535.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 35.
GenBank	BT011770	0.0	BT011770.1 Arabidopsis thaliana At4g12850 mRNA, complete cds.
GenBank	BT012387	0.0	BT012387.1 Arabidopsis thaliana At4g12850 mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001319917.1	5e-99	Far-red impaired responsive (FAR1) family protein
TrEMBL	Q6NLE7	1e-97	Q6NLE7_ARATH; At4g12850
STRING	AT4G12850.1	1e-82	(Arabidopsis thaliana)

Link Out ? help Back to Top
Phytozome	AT4G12850.2
Entrez Gene	826897
iHOP	AT4G12850
wikigenes	AT4G12850

Publications ? help Back to Top
Goda H, et al. Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis. Plant Physiol., 2004. 134(4): p. 1555-73 [PMID:15047898] Rehrauer H, et al. AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiol., 2010. 152(2): p. 487-99 [PMID:20032078]