PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G16610.1
Common Namedl4330c
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 204aa    MW: 22837 Da    PI: 10.1968
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G16610.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012527123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 +kC+ C+ksF +   L  H+++H
  AT4G16610.1  5 HKCKLCSKSFCNGRALGGHMKSH 27
                 79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.45E-5328No hitNo description
PROSITE profilePS501579.598527IPR007087Zinc finger, C2H2
PfamPF139126.3E-6527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSARKKLG DSVYSSSSSS SDGKALAYGL  60
RENPRKSFRV FNPDPESSTI YNSETETEPE SGDPVKKRVR GDVSKKKKKK AKSKRVFENS  120
KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL  180
RRCMIDLNLP PPQEAEAVTV VSAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195109KKRVRGDVSKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.330650.0flower| root| seed| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306837280.0
Genevisible245467_at0.0
Expression AtlasAT4G16610-
AtGenExpressAT4G16610-
ATTED-IIAT4G16610-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G16610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G16610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankBT0041860.0BT004186.1 Arabidopsis thaliana clone RAFL15-32-J24 (R50122) unknown protein (At4g16610) mRNA, complete cds.
GenBankBT0053920.0BT005392.1 Arabidopsis thaliana clone U50122 unknown protein (At4g16610) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_193394.11e-147C2H2-like zinc finger protein
TrEMBLO235041e-145O23504_ARATH; C2H2-like zinc finger protein
STRINGAT4G16610.11e-146(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Representative plantOGRP24041030
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]