PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G19990.2
Common NameFRS1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 774aa    MW: 90327.7 Da    PI: 6.6774
Description FAR1-related sequence 1
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G19990.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1881.4e-2735136190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                  +fY+eYA++vGF++ +++s++s+++g++++++fvC+++g+++e+ ++            +++ r +r++++t+Cka l+vk+++dg+w+v +l++eHn
  AT4G19990.2  35 EFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKEDIDTglgtdgfnipqaRKRGRINRSSSKTDCKAFLHVKRRQDGRWVVRSLVKEHN 132
                  6*******************************************999*********998889999********************************* PP

         FAR1  87 Hela 90 
                  He++
  AT4G19990.2 133 HEIF 136
                  *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-2635136IPR004330FAR1 DNA binding domain
PfamPF105511.6E-23222313IPR018289MULE transposase domain
PROSITE profilePS5096610.113505541IPR007527Zinc finger, SWIM-type
PfamPF044342.4E-5515539IPR007527Zinc finger, SWIM-type
SMARTSM005755.9E-6516543IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MSSGECSNVQ LDDHRKNNLE IDEGREFESK EEAFEFYKEY ANSVGFTTII KASRRSRMTG  60
KFIDAKFVCT RYGSKKEDID TGLGTDGFNI PQARKRGRIN RSSSKTDCKA FLHVKRRQDG  120
RWVVRSLVKE HNHEIFTGQA DSLRELSGRR KLEKLNGAIV KEVKSRKLED GDVERLLNFF  180
TDMQVENPFF FYSIDLSEEQ SLRNIFWVDA KGRFDYTCFS DVVSIDTTFI KNEYKLPLVA  240
FTGVNHHGQF LLLGFGLLLT DESKSGFVWL FRAWLKAMHG CRPRVILTKH DQMLKEAVLE  300
VFPSSRHCFY MWDTLGQMPE KLGHVIRLEK KLVDEINDAI YGSCQSEDFE KNWWEVVDRF  360
HMRDNVWLQS LYEDREYWVP VYMKDVSLAG MCTAQRSDSV NSGLDKYIQR KTTFKAFLEQ  420
YKKMIQERYE EEEKSEIETL YKQPGLKSPS PFGKQMAEVY TREMFKKFQV EVLGGVACHP  480
KKESEEDGVN KRTFRVQDYE QNRSFVVVWN SESSEVVCSC RLFELKGFLC RHAMIVLQMS  540
GELSIPSQYV LKRWTKDAKS REVMESDQTD VESTKAQRYK DLCLRSLKLS EEASLSEESY  600
NAVVNVLNEA LRKWENKSNL IQNLEESESV TAQDLPIHEE QNNTYDMNKD DNVADTGQEY  660
SLQEVWKVTA LQEQRNRYSI LDDYLSAQHM SHEMGQINSM ASNRNGYCSV HQNIHSLQGQ  720
SITHPRLYET EQSSFRPEAM YERLQDMGQS TVRHHPQQHC NASKHQHSNR NFSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147154GRRKLEKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.479520.0flower| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible254523_at0.0
Expression AtlasAT4G19990-
AtGenExpressAT4G19990-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G19990.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G19990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0216370.0AL021637.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18F4 (ESSA project).
GenBankAL1615520.0AL161552.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190776.10.0FAR1-related sequence 1
RefseqNP_001328362.10.0FAR1-related sequence 1
SwissprotQ5UBY20.0FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLF4JU190.0F4JU19_ARATH; FAR1-related sequence 1
STRINGAT4G19990.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Representative plantOGRP3012351
Publications ? help Back to Top
  1. Wang H,Deng XW
    Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1.
    EMBO J., 2002. 21(6): p. 1339-49
    [PMID:11889039]
  2. Lin R,Wang H
    Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.
    Plant Physiol., 2004. 136(4): p. 4010-22
    [PMID:15591448]