PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G22700.1
Common NameASL26, LBD32, T12H17.90
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 192aa    MW: 21286.4 Da    PI: 4.9973
Description LOB domain-containing protein 32
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G22700.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.31.3e-2951041100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp.eeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +Ca+Ck+l+++Ca+ C++ap+fp+++ ++f+++ ++FGa nv+++l++l+ +e+re+a+++l y Aear+r+P++G++ +il++++ l++++++++++
  AT4G22700.1   5 RCAVCKILNETCAPMCIYAPHFPSND-ASFKVIIQIFGAVNVCNILDNLEfPEQREIAANCLRYAAEARIRNPISGCHDMILQYKNILNNVEQDIESA 101
                  6**********************998.89********************63777***************************************99987 PP

       DUF260  98 kee 100
                   +e
  AT4G22700.1 102 VNE 104
                  665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.5844105IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-265100IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MASNRCAVCK ILNETCAPMC IYAPHFPSND ASFKVIIQIF GAVNVCNILD NLEFPEQREI  60
AANCLRYAAE ARIRNPISGC HDMILQYKNI LNNVEQDIES AVNELGTYVG HDQVPKFYDL  120
PMPDDFLMTP VSLDSFIAKI KSLNEVQKNQ LMQLPTAADN APMIMNSIFG KMEDKNLKDG  180
HRADGASTSA GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-1921088114LOB family transfactor Ramosa2.1
5ly0_B7e-1921088114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402560390.0
Genevisible254330_at0.0
Expression AtlasAT4G22700-
AtGenExpressAT4G22700-
ATTED-IIAT4G22700-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G22700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G22700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738590.0AB473859.1 Arabidopsis thaliana ASL26 mRNA for ASYMMETRIC LEAVES2-like 26 protein, complete cds.
GenBankAL0216350.0AL021635.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T12H17 (ESSAII project).
GenBankAL1615570.0AL161557.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankDQ0566540.0DQ056654.1 Arabidopsis thaliana LOB domain family protein (At4g22700) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194001.11e-142LOB domain-containing protein 32
SwissprotO496511e-143LBD32_ARATH; LOB domain-containing protein 32
TrEMBLA0A178UXH51e-137A0A178UXH5_ARATH; LBD32
STRINGAT4G22700.11e-141(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Publications ? help Back to Top
  1. Iwakawa H, et al.
    The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper.
    Plant Cell Physiol., 2002. 43(5): p. 467-78
    [PMID:12040093]
  2. Shuai B,Reynaga-Peña CG,Springer PS
    The lateral organ boundaries gene defines a novel, plant-specific gene family.
    Plant Physiol., 2002. 129(2): p. 747-61
    [PMID:12068116]
  3. Matsumura Y,Iwakawa H,Machida Y,Machida C
    Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members.
    Plant J., 2009. 58(3): p. 525-37
    [PMID:19154202]