PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G25410.1
Common NameBHLH126, EN3, T30C3.80
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 230aa    MW: 25427.8 Da    PI: 9.6138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G25410.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.4e-104493253
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                 +  h  +Er+RR+++ + f++Lr++lP       ++K   ++ +  Av++Ik+
  AT4G25410.1 44 KLLHRDIERQRRQEMATLFATLRTHLPLkY---IKGKRAVSDHVNGAVNFIKD 93
                 6679************************77...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1239114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.5664294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-844112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-74493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.98E-84793No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDPYKNLNPK GYQRQRPFSS AGESGGSGGS GTAHETDDNK KKKKLLHRDI ERQRRQEMAT  60
LFATLRTHLP LKYIKGKRAV SDHVNGAVNF IKDTEARIKE LSARRDELSR ETGQGYKSNP  120
DPGKTGSDVG KSEPATVMVQ PHVSGLEVVV SSNSSGPEAL PLSKVLETIQ EKGLEVMSSF  180
TTRVNDRLMH TIQVEVNSFG CIDLLWLQQK LVEDLILSTG KNQSLLEISL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402560640.0
Genevisible254064_at0.0
Expression AtlasAT4G25410-
AtGenExpressAT4G25410-
ATTED-IIAT4G25410-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G25410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G25410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937000.0AB493700.1 Arabidopsis thaliana At4g25410 mRNA for hypothetical protein, partial cds, clone: RAAt4g25410.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001320062.11e-163basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9STJ61e-164BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A178URA11e-159A0A178URA1_ARATH; Uncharacterized protein
STRINGAT4G25410.11e-170(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Representative plantOGRP1638838
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  3. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  4. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  5. Lee DJ, et al.
    Genome-wide expression profiling of ARABIDOPSIS RESPONSE REGULATOR 7(ARR7) overexpression in cytokinin response.
    Mol. Genet. Genomics, 2007. 277(2): p. 115-37
    [PMID:17061125]