PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G31660.1
Common NameARF25, F28M20.150, REM7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 251aa    MW: 28757.9 Da    PI: 10.1266
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G31660.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12.1e-1525971594
                 -EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3 15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                  l +p kf+++   g +  e++t+ l++  s ++W+vk+  ++++    lt GWkeF++a++ ++gD++vF+++g+  f  +v
  AT4G31660.1 25 YLNIPVKFFSKRiqGRN--EGRTVELRTdASEKTWQVKI--QGRR----LTVGWKEFASAHDFRVGDIIVFRHEGSLVF--HV 97
                 589*****998875555..5557777765999*******..8887....***********************7764333..54 PP
2B344.23.5e-14173242474
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                  + ++ ++l+++ l lp+kf ++ g++k +s +++l++e+ r+W++ l++r++s+++++++GW +F  + gL
  AT4G31660.1 173 AHVTDSNLREDTLFLPRKFDRSDGLIK-GSNKIVLMNEEARTWTLILKFRNSSRTFYMRGGWTSFSMSMGL 242
                  56789999***************9997.567**********************************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-208109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-228105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.63311103IPR003340B3 DNA binding domain
CDDcd100173.46E-161398No hitNo description
SMARTSM010192.6E-2114103IPR003340B3 DNA binding domain
PfamPF023624.1E-102695IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-12162242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-13166243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-12170242No hitNo description
PROSITE profilePS5086310.969170251IPR003340B3 DNA binding domain
SMARTSM010191.7E-6170251IPR003340B3 DNA binding domain
PfamPF023625.4E-11172242IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MADPVLQSPK NSHFFQPLLP GFDSYLNIPV KFFSKRIQGR NEGRTVELRT DASEKTWQVK  60
IQGRRLTVGW KEFASAHDFR VGDIIVFRHE GSLVFHVTAL GPSCCEIQYV PSCNNQENIS  120
NLSMKQSIKT ELESSLDEDK VNMGKFPRKK HVKKRIPEAE AKSFSSDKSC FVAHVTDSNL  180
REDTLFLPRK FDRSDGLIKG SNKIVLMNEE ARTWTLILKF RNSSRTFYMR GGWTSFSMSM  240
GLNLEIPSRL N
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402561130.0
Expression AtlasAT4G31660-
AtGenExpressAT4G31660-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G31660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G31660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5152630.0AJ515263.1 Arabidopsis thaliana mRNA for putative auxin response factor 25 (arf25 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194894.20.0AP2/B3-like transcriptional factor family protein
SwissprotQ8H2D00.0REM7_ARATH; B3 domain-containing protein REM7
TrEMBLA0A178UT080.0A0A178UT08_ARATH; Uncharacterized protein
STRINGAT4G31660.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Representative plantOGRP2682231
Publications ? help Back to Top
  1. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]