PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G36570.1
Common NameAP22.24, ATRL3, C7A10.790, RL3
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 58aa    MW: 6660.3 Da    PI: 9.1052
Description RAD-like 3
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G36570.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.3e-101154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT  E +l+ +a + +  +   +W+ +ar +g g+++++++ ++
      AT4G36570.1 11 SWTRKENKLFERALATYDQDtpdRWHNVARAVG-GKSAEEVRRHY 54
                     6*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-13454IPR009057Homeodomain-like
PROSITE profilePS512939.654758IPR017884SANT domain
SMARTSM007177.7E-5856IPR001005SANT/Myb domain
PfamPF002492.5E-81154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-61155IPR009057Homeodomain-like
CDDcd001675.08E-71254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000014anatomyrosette leaf
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
MASNSMSSSA SWTRKENKLF ERALATYDQD TPDRWHNVAR AVGGKSAEEV RRHYEPPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-18155154RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.479871e-93flower
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT4G36570
AtGenExpressAT4G36570
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G36570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q6NNN0
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G36570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615894e-94AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankCP0026874e-94CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ997084e-94Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195375.47e-37RAD-like 3
SwissprotQ6NNN02e-34RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLD7MBG54e-32D7MBG5_ARALL; At4g36570
STRINGAT4G36570.13e-36(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  3. Baxter CE,Costa MM,Coen ES
    Diversification and co-option of RAD-like genes in the evolution of floral asymmetry.
    Plant J., 2007. 52(1): p. 105-13
    [PMID:17672842]
  4. Hamaguchi A, et al.
    A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-mediated signal transduction during early morphogenesis.
    Biosci. Biotechnol. Biochem., 2008. 72(10): p. 2687-96
    [PMID:18838801]
  5. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]