PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT4G38910.1

Common Name

ATBPC5, BBR/BPC5, BPC5, F19H22.10

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

BBR-BPC

Protein Properties

Length: 258aa MW: 28922.9 Da PI: 10.0478

Description

basic pentacysteine 5

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT4G38910.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	284.1	6.2e-87	6	258	16	301
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqq 113 ++++l ++++++s++aerda+++ern a++++k+a+a+rd+a+ qrdkal+er++a++e +++l al ++en+l+ l s +k s q AT4G38910.1 6 QHNALV--MNKKIISILAERDAAVKERNEAVAATKEALASRDEALEQRDKALSERDNAIMETESALNALRYRENNLNYIL-------SCAKRGGS-Q- 92 456666..99**************************************************************955433.......22222221.1. PP GAGA_bind 114 lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvP 211 + ++e++ + pi++ ++ea +++ +k ++ke+k+ k k +e+ ++ v++++ ++s+++++s d+ v++De t+PvP AT4G38910.1 93 ---------RFITEESHLPNPSPISTIPPEAANTRPTK------RKKESKQGK--KMGEDLNRPVASPG--KKSRKDWDSNDV---LVTFDEMTMPVP 168 .........22344566667889999999999888777......445555544..44578999999999..569****9...589***** PP GAGA_bind 212 vCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +C+CtG+ rqCYkWGnGGWqS+CCttt+S yPLP+++++r++R++grKmS+++f++lL++La+eG++ls pvDLk++WA+HGtn+++ti+ AT4G38910.1 169 MCTCTGTARQCYKWGNGGWQSSCCTTTLSEYPLPQMPNKRHSRVGGRKMSGSVFSRLLSRLAGEGHELSSPVDLKNYWARHGTNRYITIK 258 ***************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.1E-124	1	258	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.0E-84	6	258	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MPKKEQHNAL VMNKKIISIL AERDAAVKER NEAVAATKEA LASRDEALEQ RDKALSERDN 60 AIMETESALN ALRYRENNLN YILSCAKRGG SQRFITEESH LPNPSPISTI PPEAANTRPT 120 KRKKESKQGK KMGEDLNRPV ASPGKKSRKD WDSNDVLVTF DEMTMPVPMC TCTGTARQCY 180 KWGNGGWQSS CCTTTLSEYP LPQMPNKRHS RVGGRKMSGS VFSRLLSRLA GEGHELSSPV 240 DLKNYWARHG TNRYITIK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.49413	0.0	flower

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	240256232	0.0
Expression Atlas	AT4G38910	-
AtGenExpress	AT4G38910	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269\|PubMed:14731261}.

Functional Description ? help Back to Top
Source	Description
TAIR	The current TAIR8 structure of this gene is incorrect. The corrected structure, which will be visible in TAIR9, indicates that this gene could possibly be a pseudogene.
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00480	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT4G38910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT4G38910

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035679	0.0	AL035679.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project).
GenBank	AL161594	0.0	AL161594.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001190957.1	0.0	basic pentacysteine 5
Refseq	NP_195602.5	0.0	basic pentacysteine 5
Swissprot	F4JUI3	0.0	BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBL	A0A178UVL3	0.0	A0A178UVL3_ARATH; BPC5
STRING	AT4G38910.2	0.0	(Arabidopsis thaliana)

Link Out ? help Back to Top
Phytozome	AT4G38910.1
Entrez Gene	830046
iHOP	AT4G38910
wikigenes	AT4G38910

Publications ? help Back to Top
Santi L, et al. The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. Plant J., 2003. 34(6): p. 813-26 [PMID:12795701] Meister RJ, et al. Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter. Plant J., 2004. 37(3): p. 426-38 [PMID:14731261] Castelli V, et al. Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation. Genome Res., 2004. 14(3): p. 406-13 [PMID:14993207]