PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G05120.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 201aa    MW: 22449.7 Da    PI: 4.8367
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G05120.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000142749123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ykC++C++ F     L  H++ H
  AT5G05120.1 27 YKCKYCPRKFDKTQALGGHQNAH 49
                 9***************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-62455No hitNo description
PROSITE profilePS5015711.782754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MLSSDSNYAS DISDDASATG SIENPIYKCK YCPRKFDKTQ ALGGHQNAHR KEREVEKQQK  60
AFLAHLNRPE PDLYAYSYSY HHSFPNQYAL PPGFEQPQYK VDRSYKMSMV YNQYVGSSSS  120
SFAGLQSDPS QGMNQDWTFT GIPFLPQSQP QPLSSPICLD LCLGIGSSQT QPQPQEPNDA  180
TEEMDAEKEN DGSSLSLSLK L
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184147950.0
Expression AtlasAT5G05120-
AtGenExpressAT5G05120-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G05120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G05120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052450.0AB005245.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUG13.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196131.11e-148C2H2 and C2HC zinc fingers superfamily protein
TrEMBLQ9FF621e-147Q9FF62_ARATH; C2H2 and C2HC zinc fingers superfamily protein
STRINGAT5G05120.11e-148(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157411316
Representative plantOGRP395527
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ohno CK,Reddy GV,Heisler MG,Meyerowitz EM
    The Arabidopsis JAGGED gene encodes a zinc finger protein that promotes leaf tissue development.
    Development, 2004. 131(5): p. 1111-22
    [PMID:14973281]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]