PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G06500.1

Common Name

AGL96

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 242aa MW: 27297.9 Da PI: 4.7785

Description

AGAMOUS-like 96

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G06500.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.3	4e-13	11	59	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeys 50 i +++ r ++ +R++g++KK +ELS+LCd++++v++f + +l ++ AT5G06500.1 11 IRDDRMRRASLKRRLTGLIKKVNELSILCDMRASVVVFNREeEQLTAWP 59 789999********************************86514566666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.292	1	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.9E-10	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.53E-24	2	85	No hit	No description
PRINTS	PR00404	7.0E-6	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-19	3	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-12	11	55	IPR002100	Transcription factor, MADS-box
Gene3D	G3DSA:3.30.450.20	6.5E-4	19	80	No hit	No description
PRINTS	PR00404	7.0E-6	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-6	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009009	anatomy	plant embryo
PO:0001185	developmental stage	plant embryo globular stage
PO:0004507	developmental stage	plant embryo bilateral stage

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MARKKVRAAW IRDDRMRRAS LKRRLTGLIK KVNELSILCD MRASVVVFNR EEEQLTAWPS 60 PEAANSLIDN FYSLTDHERT MKAVDPESYV QTVIEKIEKK RADTRKVITE FEMDELMFQV 120 QNGRELADLS PTEADKLIPY ADKKLMWLSK RMGSTGVDAL RASNVASGSG GNGLNMMETG 180 RSFYYVDKWV FVDPQVQNPC DVETHLPTMV SGLDLNMEPS DEDLGTYKGE SSMAGGAEDD 240 AE

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	250731_at	0.0
Expression Atlas	AT5G06500	-
AtGenExpress	AT5G06500	-
ATTED-II	AT5G06500	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G06500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT1G48150, AT1G77980

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G06500

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002543	0.0	AP002543.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	DQ056672	0.0	DQ056672.1 Arabidopsis thaliana MADS-box family protein (At5g06500) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_196268.1	0.0	AGAMOUS-like 96
TrEMBL	Q9FG20	1e-179	Q9FG20_ARATH; AGAMOUS-like 96
STRING	AT5G06500.1	1e-180	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8774	13	32
Representative plant	OGRP114	13	173

Link Out ? help Back to Top
Phytozome	AT5G06500.1
Entrez Gene	830538
iHOP	AT5G06500
wikigenes	AT5G06500

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] De Bodt S, et al. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants. J. Mol. Evol., 2003. 56(5): p. 573-86 [PMID:12698294] Parenicová L, et al. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Plant Cell, 2003. 15(7): p. 1538-51 [PMID:12837945] Kofuji R, et al. Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses. Mol. Biol. Evol., 2003. 20(12): p. 1963-77 [PMID:12949148] De Bodt S,Raes J,Van de Peer Y,Theissen G And then there were many: MADS goes genomic. Trends Plant Sci., 2003. 8(10): p. 475-83 [PMID:14557044] de Folter S, et al. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. Plant Cell, 2005. 17(5): p. 1424-33 [PMID:15805477] Pina C,Pinto F,Feij Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. Plant Physiol., 2005. 138(2): p. 744-56 [PMID:15908605] Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis. Plant Physiol., 2010. 154(1): p. 287-300 [PMID:20631316]