PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G19790.1

Common Name

ERF002, RAP2-11, RAP2.11, T29J13.210

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ERF

Protein Properties

Length: 253aa MW: 28374.7 Da PI: 7.687

Description

related to AP2 11

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G19790.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.6	1.5e-18	20	70	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +g+WvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g AT5G19790.1 20 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 70 699*****.7*****32...35********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.23E-33	20	80	No hit	No description
Pfam	PF00847	5.2E-13	20	70	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.823	21	78	IPR001471	AP2/ERF domain
SMART	SM00380	7.0E-39	21	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.9E-28	21	79	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-19	21	78	IPR016177	DNA-binding domain
PRINTS	PR00367	4.1E-8	22	33	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-8	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000302	Biological Process	response to reactive oxygen species
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0009873	Biological Process	ethylene-activated signaling pathway
GO:0035865	Biological Process	cellular response to potassium ion
GO:0048528	Biological Process	post-embryonic root development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000256	anatomy	root hair cell
PO:0000293	anatomy	guard cell
PO:0003015	anatomy	primary root differentiation zone
PO:0005679	anatomy	epidermis

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA 60 YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS MKQQQQQQHK PVSSLTDCNI 120 NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL 180 AQAGGETHGH LNDHYSTDQH LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI 240 WDLPSLSQLF CPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	5e-15	22	77	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	2281646	0.0
Genevisible	245966_at	0.0
Expression Atlas	AT5G19790	-
AtGenExpress	AT5G19790	-
ATTED-II	AT5G19790	-

Functional Description ? help Back to Top
Source	Description
TAIR	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Function -- GeneRIF ? help Back to Top
RAP2.11 regulates AtHAK5 expression under low-K+ conditions. [PMID: 22406475]

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00521	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G19790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G19790

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF003104	0.0	AF003104.1 Arabidopsis thaliana AP2 domain containing protein RAP2.11 mRNA, partial cds.
GenBank	AY560854	0.0	AY560854.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g19790) mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	T29J13	0.0	AF296838.1 Arabidopsis thaliana BAC T29J13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_197480.1	0.0	related to AP2 11
Swissprot	Q6J9S1	0.0	RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBL	A0A178UQ22	1e-162	A0A178UQ22_ARATH; RAP2.11
STRING	AT5G19790.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7526	26	41
Representative plant	OGRP6	16	1718

Link Out ? help Back to Top
Phytozome	AT5G19790.1
Entrez Gene	832099
iHOP	AT5G19790
wikigenes	AT5G19790

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Czechowski T,Bari RP,Stitt M,Scheible WR,Udvardi MK Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J., 2004. 38(2): p. 366-79 [PMID:15078338] Tai HH,Tai GC,Beardmore T Dynamic histone acetylation of late embryonic genes during seed germination. Plant Mol. Biol., 2005. 59(6): p. 909-25 [PMID:16307366] Nakano T,Suzuki K,Fujimura T,Shinshi H Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol., 2006. 140(2): p. 411-32 [PMID:16407444] Lee JY, et al. Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(15): p. 6055-60 [PMID:16581911] Jung J, et al. The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis. Planta, 2007. 225(3): p. 575-88 [PMID:16937017] Ma S,Bohnert HJ Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression. Genome Biol., 2007. 8(4): p. R49 [PMID:17408486] Vernié T, et al. EFD Is an ERF transcription factor involved in the control of nodule number and differentiation in Medicago truncatula. Plant Cell, 2008. 20(10): p. 2696-713 [PMID:18978033] Gong W, et al. The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors. Mol Plant, 2008. 1(1): p. 27-41 [PMID:19802365] An D,Yang J,Zhang P Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress. BMC Genomics, 2012. 13: p. 64 [PMID:22321773] Kim MJ,Ruzicka D,Shin R,Schachtman DP The Arabidopsis AP2/ERF transcription factor RAP2.11 modulates plant response to low-potassium conditions. Mol Plant, 2012. 5(5): p. 1042-57 [PMID:22406475] Efroni I, et al. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474] Meng S, et al. Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level. Mol Plant, 2016. 9(3): p. 461-470 [PMID:26732494] Okamuro JK,Caster B,Villarroel R,Van Montagu M,Jofuku KD The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(13): p. 7076-81 [PMID:9192694]