PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G25810.1
Common NameERF040, F18A17.60, TINY, tny
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 218aa    MW: 23941.6 Da    PI: 5.1113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G25810.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-183484155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  AT5G25810.1 34 PVYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 84
                 68*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-133484IPR001471AP2/ERF domain
PROSITE profilePS5103223.6573592IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-213593IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-313593IPR001471AP2/ERF domain
SMARTSM003806.5E-343598IPR001471AP2/ERF domain
CDDcd000184.61E-313694No hitNo description
PRINTSPR003675.0E-103647IPR001471AP2/ERF domain
PRINTSPR003675.0E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0020030anatomycotyledon
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MIASESTKSW EASAVRQENE EEKKKPVKDS GKHPVYRGVR KRNWGKWVSE IREPRKKSRI  60
WLGTFPSPEM AARAHDVAAL SIKGASAILN FPDLAGSFPR PSSLSPRDIQ VAALKAAHME  120
TSQSFSSSSS LTFSSSQSSS SLESLVSSSA TGSEELGEIV ELPSLGSSYD GLTQLGNEFI  180
FSDSADLWPY PPQWSEGDYQ MIPASLSQDW DLQGLYNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1833921272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.53730.0bud| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306900080.0
Genevisible246911_at0.0
Expression AtlasAT5G25810-
AtGenExpressAT5G25810-
ATTED-IIAT5G25810-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G25810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
IntActSearch Q39127
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G25810
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054050.0AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankAY5608550.0AY560855.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g25810) mRNA, complete cds.
GenBankBT0249230.0BT024923.1 Arabidopsis thaliana At5g25810 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankX946980.0X94698.1 A.thaliana TINY mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197953.11e-156Integrase-type DNA-binding superfamily protein
SwissprotQ391271e-157TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A178URN21e-155A0A178URN2_ARATH; Tny
STRINGAT5G25810.11e-156(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Sakuma Y, et al.
    DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression.
    Biochem. Biophys. Res. Commun., 2002. 290(3): p. 998-1009
    [PMID:11798174]
  3. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Mao Y,Pavangadkar KA,Thomashow MF,Triezenberg SJ
    Physical and functional interactions of Arabidopsis ADA2 transcriptional coactivator proteins with the acetyltransferase GCN5 and with the cold-induced transcription factor CBF1.
    Biochim. Biophys. Acta, 2006 Jan-Feb. 1759(1-2): p. 69-79
    [PMID:16603259]
  6. Kircher S,Schopfer P
    Photosynthetic sucrose acts as cotyledon-derived long-distance signal to control root growth during early seedling development in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(28): p. 11217-21
    [PMID:22733756]
  7. Meinke DW
    A survey of dominant mutations in Arabidopsis thaliana.
    Trends Plant Sci., 2013. 18(2): p. 84-91
    [PMID:22995285]
  8. Wilson K,Long D,Swinburne J,Coupland G
    A Dissociation insertion causes a semidominant mutation that increases expression of TINY, an Arabidopsis gene related to APETALA2.
    Plant Cell, 1996. 8(4): p. 659-71
    [PMID:8624440]