PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G26749.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 147aa    MW: 16728.7 Da    PI: 8.7291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G26749.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.3e-075980526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 lC++f  + +C++Gd+C++ H+
  AT5G26749.1 59 LCNRFITSNFCPFGDSCRYFHP 80
                 8******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0016338IPR003604Zinc finger, U1-type
SuperFamilySSF576673.25E-12447No hitNo description
PfamPF062202.2E-8537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010312.695482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-65783IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-65980IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPSGKYYCDY CEKEFQDTQV ARKRHLQSKP HLRAKALWYS SSSSDLVNPQ VSNFATKGLC  60
NRFITSNFCP FGDSCRYFHP NNNTGSTGFT NNTQLRVDML NQQHIQGSTL NRDFVSGRPG  120
TGWFDLPPSL KPPPEQGYPQ LPFIDWG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT5G26749
AtGenExpressAT5G26749
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G26749.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G26749
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0007322e-67AJ000732.1 Arabidopsis thaliana ASKalpha gene.
GenBankCP0026882e-67CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF2P162e-67AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001154741.11e-108C2H2 and C2HC zinc fingers superfamily protein
TrEMBLF4K1A81e-107F4K1A8_ARATH; C2H2 and C2HC zinc fingers superfamily protein
STRINGAT5G26749.21e-103(Arabidopsis thaliana)