PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G27050.1
Common NameAGL101
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 120aa    MW: 14188.5 Da    PI: 9.9687
Description AGAMOUS-like 101
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G27050.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.64.4e-151322050
                 HHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
       SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl.yeys 50
                 ++KKA ELS+LC++ev+vi+++ +g+l ++++
  AT5G27050.1  1 MFKKALELSTLCNIEVCVIYYGRDGELfKTWP 32
                 69***********************9835776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.6E-9128IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.657134IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-12168IPR002100Transcription factor, MADS-box
CDDcd002665.07E-16159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MFKKALELST LCNIEVCVIY YGRDGELFKT WPEDESKVRD MAERFTKLNE RERRKKRTNL  60
SLFLRKKILD DNKLSGKVLE MKDSLERGLR VLQDKLLLLQ PENQTKSLTR SVSSLDYVFV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184210740.0
Genevisible246805_at1e-135
Expression AtlasAT5G27050-
AtGenExpressAT5G27050-
ATTED-IIAT5G27050-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G27050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G38620, AT5G49420, AT1G46408, AT1G48150
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G27050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ0566930.0DQ056693.1 Arabidopsis thaliana MADS-box family protein (At5g27050) mRNA, complete cds.
GenBankF15P110.0AF160760.1 Arabidopsis thaliana BAC F15P11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198057.13e-81AGAMOUS-like 101
SwissprotQ7X9N28e-61AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLQ4PSE37e-80Q4PSE3_ARATH; AGAMOUS-like 101
STRINGAT5G27050.11e-80(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Representative plantOGRP6766218
Publications ? help Back to Top
  1. Sessions A, et al.
    A high-throughput Arabidopsis reverse genetics system.
    Plant Cell, 2002. 14(12): p. 2985-94
    [PMID:12468722]
  2. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  3. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  4. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  5. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  6. Tamura K,Fukao Y,Iwamoto M,Haraguchi T,Hara-Nishimura I
    Identification and characterization of nuclear pore complex components in Arabidopsis thaliana.
    Plant Cell, 2010. 22(12): p. 4084-97
    [PMID:21189294]
  7. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]