PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G27090.1
Common NameAGL54, F15P11.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21737.8 Da    PI: 9.2242
Description AGAMOUS-like 54
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G27090.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF626.7e-202775350
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                 ++++ ++++ +s R ++++KKA ELS+LCd+ev+vi+++ +gkl ++++
  AT5G27090.1 27 SSSNAKKTTNLSMREQTMFKKALELSTLCDIEVCVIYYGRDGKLiKTWP 75
                 6788899999*********************************856886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-12676IPR002100Transcription factor, MADS-box
CDDcd002663.75E-2320102No hitNo description
PROSITE profilePS5006610.9052977IPR002100Transcription factor, MADS-box
PfamPF003194.4E-132970IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-1529110IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020093anatomyantipodal cell
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDSSTSTKKN TKLFVRNQTC FKKSSLSSSN AKKTTNLSMR EQTMFKKALE LSTLCDIEVC  60
VIYYGRDGKL IKTWPEDQSK VRDMAERFSR LHERERCKKR TNLSLFLRKQ ILHDKKLSEK  120
VLEMEDSLES GLRVLQDKLL LLQPEKNQTE LGQSCAVYST TYPLSSPSLI EDHQHQQQWT  180
EPLSNTE
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible246851_at2e-58
Expression AtlasAT5G27090-
AtGenExpressAT5G27090-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G27090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G49490
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G27090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412180.0AY141218.1 Arabidopsis thaliana MADS-box protein AGL54 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF15P110.0AF160760.1 Arabidopsis thaliana BAC F15P11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198061.21e-135AGAMOUS-like 54
SwissprotQ7X9N21e-103AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLQ9S9U21e-134Q9S9U2_ARATH; AGAMOUS-like 54
STRINGAT5G27090.11e-135(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Representative plantOGRP6766218
Publications ? help Back to Top
  1. Sessions A, et al.
    A high-throughput Arabidopsis reverse genetics system.
    Plant Cell, 2002. 14(12): p. 2985-94
    [PMID:12468722]
  2. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  3. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  4. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  5. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  6. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  7. Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
    An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
    Plant Physiol., 2010. 154(1): p. 287-300
    [PMID:20631316]
  8. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]