PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G27910.1

Common Name

F14I23.70, F15F15.1, NFYC8, NF-YC8

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YC

Protein Properties

Length: 187aa MW: 20609.4 Da PI: 4.4286

Description

nuclear factor Y, subunit C8

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G27910.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	168.6	7.3e-53	17	115	1	99
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 qlksfw+k++e + dfknh+lP++rikki+k+d+dv+mi++eaP+llskace+fi++lt+rswlha+e+kr tl+ks+++aav++t+ifdfl+d+ ++ AT5G27910.1 17 QLKSFWSKEMEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIMDLTMRSWLHAQESKRVTLQKSNVDAAVAQTVIFDFLLDDDIE 114 89********************************************************************************************9876 PP NF-YC 99 d 99 AT5G27910.1 115 V 115 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.19E-28	2	108	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.6E-30	29	99	IPR009072	Histone-fold
Pfam	PF00808	9.9E-18	37	99	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0003011	anatomy	root vascular system
PO:0009005	anatomy	root

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MENNNGNNQL PPKGNEQLKS FWSKEMEGNL DFKNHDLPIT RIKKIMKYDP DVTMIASEAP 60 ILLSKACEMF IMDLTMRSWL HAQESKRVTL QKSNVDAAVA QTVIFDFLLD DDIEVKRESV 120 AAAADPVAMP PIDDGELPPG MVIGTPVCCS LGIHQPQPQM QAWPGAWTSV SGEEEEARGK 180 KGGDDGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-35	24	110	5	91	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	246754_at	0.0
Expression Atlas	AT5G27910	-
AtGenExpress	AT5G27910	-
ATTED-II	AT5G27910	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G27910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT5G47640, AT5G47670, AT1G09030, AT1G21970

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G27910

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007399	0.0	AC007399.1 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete sequence.
GenBank	AC007627	0.0	AC007627.3 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	DQ056694	0.0	DQ056694.1 Arabidopsis thaliana putative CCAAT-box binding transcription factor Hap5a (At5g27910) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_198143.1	1e-138	nuclear factor Y, subunit C8
Swissprot	Q4PSE2	1e-139	NFYC8_ARATH; Nuclear transcription factor Y subunit C-8
TrEMBL	C0SVR3	1e-136	C0SVR3_ARATH; Uncharacterized protein At5g27910 (Fragment)
STRING	AT5G27910.1	1e-137	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17675	5	10
Representative plant	OGRP315	17	117

Link Out ? help Back to Top
Phytozome	AT5G27910.1
Entrez Gene	832857
iHOP	AT5G27910
wikigenes	AT5G27910

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Gusmaroli G,Tonelli C,Mantovani R Regulation of the CCAAT-Binding NF-Y subunits in Arabidopsis thaliana. Gene, 2001. 264(2): p. 173-85 [PMID:11250072] Gusmaroli G,Tonelli C,Mantovani R Regulation of novel members of the Arabidopsis thaliana CCAAT-binding nuclear factor Y subunits. Gene, 2002. 283(1-2): p. 41-8 [PMID:11867211] Stevens R, et al. A CDC45 homolog in Arabidopsis is essential for meiosis, as shown by RNA interference-induced gene silencing. Plant Cell, 2004. 16(1): p. 99-113 [PMID:14660803] Hackenberg D, et al. Studies on differential nuclear translocation mechanism and assembly of the three subunits of the Arabidopsis thaliana transcription factor NF-Y. Mol Plant, 2012. 5(4): p. 876-88 [PMID:22199235] Calvenzani V, et al. Interactions and CCAAT-binding of Arabidopsis thaliana NF-Y subunits. PLoS ONE, 2012. 7(8): p. e42902 [PMID:22912760] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]