PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G41765.1

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 152aa MW: 17372.9 Da PI: 10.2048

Description

DNA-binding storekeeper protein-related transcriptional regulator

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G41765.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	43.5	9.1e-14	42	103	17	80
DUF573 17 qGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsf 80 + ++dfka t +psdd+++ y+f+++ is++v + ++veK+++LKkK +k+ + k+ s AT5G41765.1 42 KSMMDFKALTRHNPSDDMTGAYNFLHEYISVDVYSYEFVEKMKSLKKKLIEKMGI--NAKDLSS 103 78***************************************************99..4444333 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008150	Biological Process	biological_process
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MDKANTNRSK KEVCGGSGEA KPTGKKRKNE RTLTNKNVNA KKSMMDFKAL TRHNPSDDMT 60 GAYNFLHEYI SVDVYSYEFV EKMKSLKKKL IEKMGINAKD LSSSIGSELL KLIWRYDVKS 120 VVEYNLLKIE QANFTSHPQI SFNNSEPKKT NL

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	22327503	0.0
Expression Atlas	AT5G41765	-
AtGenExpress	AT5G41765	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G41765.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G41765

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB016871	0.0	AB016871.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16L22.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_680374.1	1e-109	DNA-binding storekeeper protein-related transcriptional regulator
Swissprot	F4JYJ1	1e-110	STKLV_ARATH; Probable transcription factor At5g41765
TrEMBL	D7MIR8	2e-31	D7MIR8_ARALL; Uncharacterized protein
STRING	AT5G41765.1	1e-108	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16691	7	12

Link Out ? help Back to Top
Phytozome	AT5G41765.1
Entrez Gene	834181
iHOP	AT5G41765
wikigenes	AT5G41765