PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G42640.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 300aa    MW: 35295.4 Da    PI: 9.9691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G42640.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011243265123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+Cp C+ +F ++  +  H+ +H
  AT5G42640.1 243 YTCPRCNGVFDTSQKFAAHMLSH 265
                  9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-5231267No hitNo description
PROSITE profilePS501579.349243270IPR007087Zinc finger, C2H2
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSSIPNRFNI YGGDTTNHRE SLPIEMNHNS RMVRSMFITS DRMNHRDLFS SPPSFSSYQN  60
SHISSSSVGF NNSHMTYHML KRNYDSVSRA DYFSTKDHSH FTQVSFTQTI TNKYTTIVPS  120
NIFDTVHYDI GRVKRAIDFR NIWNPKSHLP KKFNRQCEIL NPTPLNIVFP HQDSADRQHL  180
DIIFSSSKHN HVFQDGRSLK KISEPTNLFE KSNSYDSQED EKIDAYQYDG RTHSLPYTKY  240
GPYTCPRCNG VFDTSQKFAA HMLSHYNNET DKERDQRFRA RNKKRYRKFM DSLKISKQKI
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184222330.0
Genevisible249207_at0.0
Expression AtlasAT5G42640-
AtGenExpressAT5G42640-
ATTED-IIAT5G42640-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G42640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G42640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133910.0AB013391.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFO20.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199078.10.0C2H2 and C2HC zinc fingers superfamily protein
TrEMBLQ9FJV40.0Q9FJV4_ARATH; C2H2 and C2HC zinc fingers superfamily protein
STRINGAT5G42640.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]