PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G42700.1
Common NameMJB21.7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 211aa    MW: 24057.8 Da    PI: 10.1176
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G42700.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51.1e-17110197196
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+k +++s+v+   +l lp +f+++h g+   +   +tl de+g+++e  +  rk++    l++GW +F+ a++L  gD++vF+l++r+ f  +v +
  AT5G42700.1 110 FVKSMLQSHVSGGFWLGLPVQFCKSHlGLH-DG--VITLIDEEGEEYETIYLARKNG----LSGGWMGFAVAHNLAYGDTLVFELVRRTAF--KVYI 197
                  89************************7444.23..6***************667776....*************************99999..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-25103203IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-19105199IPR015300DNA-binding pseudobarrel domain
CDDcd100179.32E-26108199No hitNo description
PfamPF023626.8E-15110198IPR003340B3 DNA binding domain
SMARTSM010198.8E-25110201IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97110201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009031anatomysepal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVVEKQTKYE EFRLKRVEEN KKRMEALNLP KLSQILNSTS VKISPMKKRS IPRTPEKKMV  60
DVKRVHIQRR GVGKKRDLLN RVYVSEEIRD EAISRANKFQ DELGSGYPSF VKSMLQSHVS  120
GGFWLGLPVQ FCKSHLGLHD GVITLIDEEG EEYETIYLAR KNGLSGGWMG FAVAHNLAYG  180
DTLVFELVRR TAFKVYITRV GSCGESSKDM S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.301570.0flower| inflorescence
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306941130.0
Genevisible249213_at1e-167
Expression AtlasAT5G42700-
AtGenExpressAT5G42700-
ATTED-IIAT5G42700-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G42700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G42700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076471e-114AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBankCP0026881e-114CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318733.11e-151AP2/B3-like transcriptional factor family protein
SwissprotQ9FMZ41e-157Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A2H1ZE861e-149A0A2H1ZE86_ARATH; AP2/B3-like transcriptional factor family protein
STRINGAT5G42700.11e-155(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Representative plantOGRP9951658
Publications ? help Back to Top
  1. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]