PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G43650.1

Common Name

BHLH92, EN22, K9D7.15

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 247aa MW: 29012.5 Da PI: 10.2239

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G43650.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	88	135	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r h Er RR++ ++++ L +llP a +K++K +i+ekAv+ I +Lq AT5G43650.1 88 RRHMLKERTRREKQKQSYLALHSLLPFA-----TKNDKNSIVEKAVDEIAKLQ 135 568999********************.....9**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-11	79	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.42E-8	83	139	No hit	No description
PROSITE profile	PS50888	13.167	85	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	88	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-6	89	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.5E-5	91	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDNFFLGLSC QEENNFWDLI VADISGDRSV SVPIRSAFRS YMKDTELRMM SPKISSSKVN 60 VKKRMVNLLR KNWEEKKNTV APEKERSRRH MLKERTRREK QKQSYLALHS LLPFATKNDK 120 NSIVEKAVDE IAKLQRLKKE LVRRIKVIEE KSAKDGHDEM SETKVRVNLK EPLSGLDSML 180 EALHYLKSMG TKLKTVHANF SPQEFSATMT IETQIRGEEV EKRVERRLQE TEWKLLFLPE 240 ASFYKDY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.28504	0.0	root

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AT5G43650
AtGenExpress	AT5G43650

Function -- GeneRIF ? help Back to Top
Transcription factor bHLH92 functions in plant responses to osmotic stresses. The net contribution of bHLH92-regulated genes to stress tolerance appears relatively limited in proportion to what might be expected from its expression pattern. [bHLH92] [PMID: 19760256]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G43650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G43650

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065390	0.0	AY065390.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds.
GenBank	AY096718	0.0	AY096718.1 Arabidopsis thaliana unknown protein (At5g43650) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_199178.1	0.0	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9FIX5	0.0	BH092_ARATH; Transcription factor bHLH92
TrEMBL	A0A178ULD2	1e-177	A0A178ULD2_ARATH; BHLH92
STRING	AT5G43650.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37
Representative plant	OGRP9763	11	12

Link Out ? help Back to Top
Phytozome	AT5G43650.1
Entrez Gene	834385
iHOP	AT5G43650
wikigenes	AT5G43650

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Heim MA, et al. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol., 2003. 20(5): p. 735-47 [PMID:12679534] Toledo-Ortiz G,Huq E,Quail PH The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell, 2003. 15(8): p. 1749-70 [PMID:12897250] Yamada K, et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] Bailey PC, et al. Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. Plant Cell, 2003. 15(11): p. 2497-502 [PMID:14600211] Jiang Y,Deyholos MK Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes. BMC Plant Biol., 2006. 6: p. 25 [PMID:17038189] Mah Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genome. Plant Mol. Biol., 2007. 64(6): p. 699-711 [PMID:17551672] Hanano S, et al. A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters. BMC Genomics, 2008. 9: p. 182 [PMID:18426557] Nagano AJ,Fukao Y,Fujiwara M,Nishimura M,Hara-Nishimura I Antagonistic jacalin-related lectins regulate the size of ER body-type beta-glucosidase complexes in Arabidopsis thaliana. Plant Cell Physiol., 2008. 49(6): p. 969-80 [PMID:18467340] Krishnaswamy SS, et al. Transcriptional profiling of pea ABR17 mediated changes in gene expression in Arabidopsis thaliana. BMC Plant Biol., 2008. 8: p. 91 [PMID:18783601] Loudet O, et al. A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(44): p. 17193-8 [PMID:18971337] Jiang Y,Yang B,Deyholos MK Functional characterization of the Arabidopsis bHLH92 transcription factor in abiotic stress. Mol. Genet. Genomics, 2009. 282(5): p. 503-16 [PMID:19760256] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]