PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G46010.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WOX
Protein Properties Length: 122aa    MW: 14043.6 Da    PI: 6.9735
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G46010.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.53.5e-1652112256
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl.....gLterqVkvWFqNrRakek 56 
                  ++ ++++++q ++LeelF   + +ps +++++++ kl     ++++++V+ WF+Nr++ +k
  AT5G46010.1  52 KPEWKPNQHQAQILEELFIGgTVNPSLTSIKQITIKLqsygeEVDDADVYKWFHNRKYSRK 112
                  899****************99*************************************988 PP
2Wus_type_Homeobox62.31e-2052112362
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGk.iedkNVfyWFQNrkaRer 62 
                        ++ W P+++Q +iLeel+  G+++P+   i++it +L++yG+ ++d+ V+ WF Nrk   +
        AT5G46010.1  52 KPEWKPNQHQAQILEELFIGGTVNPSLTSIKQITIKLQSYGEeVDDADVYKWFHNRKYSRK 112
                        678**************************************55*************96554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.2E-744112IPR009057Homeodomain-like
PfamPF000464.6E-1452112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-455112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MSSSSNKNSN KDHDDHHNDQ GQHNTIHTPS FMHTFEISNI SSPSSPVVSD PKPEWKPNQH  60
QAQILEELFI GGTVNPSLTS IKQITIKLQS YGEEVDDADV YKWFHNRKYS RKPKLVSYFM  120
FL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184226180.0
Genevisible248930_at1e-150
Expression AtlasAT5G46010-
AtGenExpressAT5G46010-
ATTED-IIAT5G46010-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G46010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G46010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0066981e-126AB006698.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCL19.
GenBankCP0026881e-126CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318748.18e-80Homeodomain-like superfamily protein
TrEMBLQ9FNM13e-85Q9FNM1_ARATH; Uncharacterized protein
STRINGAT5G46010.16e-86(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3049222
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. R
    Rapid identification of Arabidopsis insertion mutants by non-radioactive detection of T-DNA tagged genes.
    Plant J., 2002. 32(2): p. 243-53
    [PMID:12383089]
  3. Carter C, et al.
    The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins.
    Plant Cell, 2004. 16(12): p. 3285-303
    [PMID:15539469]