PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G50470.1
Common NameMBA10.2, NFYC7, NF-YC7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YC
Protein Properties Length: 212aa    MW: 23195.2 Da    PI: 4.9837
Description nuclear factor Y, subunit C7
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G50470.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC149.56.9e-4744148199
        NF-YC   1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkk......sdiaaavtrtdifdfl 92 
                  q++++w++q+++atd+k+h++Pl+rikki+k++++v+m++aeaPvl+skace++il+lt+rswlh+ e  r+tlk+      sdi+aa+tr+++f+fl
  AT5G50470.1  44 QMRNYWIAQMGNATDVKHHAFPLTRIKKIMKSNPEVNMVTAEAPVLISKACEMLILDLTMRSWLHTVEGGRQTLKRsdtltrSDISAATTRSFKFTFL 141
                  79*********************************************************************9988622222268************** PP

        NF-YC  93 vdivprd 99 
                   d+vprd
  AT5G50470.1 142 GDVVPRD 148
                  *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.53E-2240169IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.2E-2657121IPR009072Histone-fold
PfamPF008083.3E-1464121IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000005anatomycultured plant cell
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEENNGNNNH YLPQPSSSQL PPPPLYYQSM PLPSYSLPLP YSPQMRNYWI AQMGNATDVK  60
HHAFPLTRIK KIMKSNPEVN MVTAEAPVLI SKACEMLILD LTMRSWLHTV EGGRQTLKRS  120
DTLTRSDISA ATTRSFKFTF LGDVVPRDPS VVTDDPVLHP DGEVLPPGTV IGYPVFDCNG  180
VYASPPQMQE WPAVPGDGEE AAGEIGGSSG GN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B8e-3052147695NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible248503_at0.0
Expression AtlasAT5G50470-
AtGenExpressAT5G50470-
ATTED-IIAT5G50470-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G50470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G09030, AT1G21970
IntActSearch Q9FGP8
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G50470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256190.0AB025619.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBA10.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ0567120.0DQ056712.1 Arabidopsis thaliana putative CCAAT-box binding transcription factor Hap5a (At5g50470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199858.11e-157nuclear factor Y, subunit C7
SwissprotQ9FGP81e-158NFYC7_ARATH; Nuclear transcription factor Y subunit C-7
TrEMBLC0SVT11e-156C0SVT1_ARATH; Uncharacterized protein At5g50470 (Fragment)
STRINGAT5G50470.11e-157(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2021046
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Gusmaroli G,Tonelli C,Mantovani R
    Regulation of the CCAAT-Binding NF-Y subunits in Arabidopsis thaliana.
    Gene, 2001. 264(2): p. 173-85
    [PMID:11250072]
  3. Gusmaroli G,Tonelli C,Mantovani R
    Regulation of novel members of the Arabidopsis thaliana CCAAT-binding nuclear factor Y subunits.
    Gene, 2002. 283(1-2): p. 41-8
    [PMID:11867211]
  4. Wenkel S, et al.
    CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis.
    Plant Cell, 2006. 18(11): p. 2971-84
    [PMID:17138697]
  5. Hackenberg D, et al.
    Studies on differential nuclear translocation mechanism and assembly of the three subunits of the Arabidopsis thaliana transcription factor NF-Y.
    Mol Plant, 2012. 5(4): p. 876-88
    [PMID:22199235]
  6. Calvenzani V, et al.
    Interactions and CCAAT-binding of Arabidopsis thaliana NF-Y subunits.
    PLoS ONE, 2012. 7(8): p. e42902
    [PMID:22912760]
  7. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]